Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031931 |
| length | 904 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 7 |
| gene id | XLOC_016185 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 9983079 ~ 9989947 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006364 | rRNA processing | biological_process |
| GO:0032040 | small-subunit processome | cellular_component |
| GO:0034457 | Mpp10 complex | cellular_component |
| GO:0019843 | rRNA binding | molecular_function |
| GO:0030515 | snoRNA binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1062 | Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Orthologous to human IMP3 (IMP U3 small nucleolar ribonucleoprotein 3). |
| ensembl_id | ENSDART00000184369 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00031924 | lncRNA | downstream | 119691 | 9862833 ~ 9863388 (-) | True | XLOC_016181 |
| TCONS_00031921 | lncRNA | downstream | 178532 | 9804247 ~ 9804547 (-) | False | XLOC_016179 |
| TCONS_00033778 | lncRNA | downstream | 234863 | 9746437 ~ 9748216 (-) | False | XLOC_016178 |
| TCONS_00031942 | lncRNA | upstream | 438946 | 10428893 ~ 10432848 (-) | True | XLOC_016191 |
| TCONS_00031950 | lncRNA | upstream | 632288 | 10622235 ~ 10632377 (-) | True | XLOC_016194 |
| TCONS_00031964 | lncRNA | upstream | 966274 | 10956221 ~ 11027191 (-) | True | XLOC_016200 |
| TCONS_00031975 | lncRNA | upstream | 1261150 | 11251097 ~ 11258378 (-) | True | XLOC_016203 |
| TCONS_00031976 | lncRNA | upstream | 1340777 | 11330724 ~ 11331316 (-) | True | XLOC_016204 |
| TCONS_00031928 | mRNA | downstream | 11351 | 9958081 ~ 9971728 (-) | False | XLOC_016183 |
| TCONS_00031927 | mRNA | downstream | 11428 | 9958081 ~ 9971651 (-) | False | XLOC_016183 |
| TCONS_00031929 | mRNA | downstream | 11470 | 9959060 ~ 9971609 (-) | True | XLOC_016183 |
| TCONS_00031926 | mRNA | downstream | 67209 | 9869058 ~ 9915870 (-) | True | XLOC_016182 |
| TCONS_00031925 | mRNA | downstream | 67265 | 9868601 ~ 9915814 (-) | False | XLOC_016182 |
| TCONS_00031933 | mRNA | upstream | 66153 | 10056100 ~ 10062575 (-) | True | XLOC_016186 |
| TCONS_00031934 | mRNA | upstream | 97387 | 10087334 ~ 10098191 (-) | True | XLOC_016187 |
| TCONS_00031935 | mRNA | upstream | 193693 | 10183640 ~ 10188598 (-) | False | XLOC_016188 |
| TCONS_00031936 | mRNA | upstream | 195383 | 10185330 ~ 10192487 (-) | False | XLOC_016188 |
| TCONS_00031937 | mRNA | upstream | 195408 | 10185355 ~ 10192459 (-) | True | XLOC_016188 |
| TCONS_00031915 | other | downstream | 235648 | 9747302 ~ 9747431 (-) | True | XLOC_016178 |
| TCONS_00031914 | other | downstream | 236086 | 9746858 ~ 9746993 (-) | False | XLOC_016178 |
| TCONS_00031909 | other | downstream | 294894 | 9688055 ~ 9688185 (-) | True | XLOC_016176 |
| TCONS_00031903 | other | downstream | 438918 | 9529488 ~ 9544161 (-) | False | XLOC_016171 |
| TCONS_00031900 | other | downstream | 576404 | 9406558 ~ 9406675 (-) | True | XLOC_016169 |
| TCONS_00031958 | other | upstream | 915115 | 10905062 ~ 10905179 (-) | True | XLOC_016199 |
| TCONS_00031983 | other | upstream | 1666606 | 11656553 ~ 11662923 (-) | True | XLOC_016210 |
| TCONS_00031991 | other | upstream | 2234476 | 12224423 ~ 12224539 (-) | True | XLOC_016216 |
| TCONS_00031998 | other | upstream | 3262205 | 13252152 ~ 13254797 (-) | True | XLOC_016221 |
| TCONS_00032033 | other | upstream | 5004446 | 14994393 ~ 14994490 (-) | True | XLOC_016250 |
