RNA id: TCONS_00031932


Basic Information

Item Value
RNA id TCONS_00031932
length 576
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_016185
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9983079 ~ 9989947 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCGTAAGCTGAAGTGAGCAAGTTATTAACACGTTTAGCCATAAATATAGCCCGTGTTTTTTAGCAAAATGGTACGTAAATTAAAATTTCACGAGCAGAAACTCTTGAAGAAAGTTGATTTTATTAACTGGGAGGTTGACAACAATATACACGAGGTTAAAGTGTTGAGAAAATACCATATTGAGAAGAGGGAAGATTATACCAAATACAACAAACTTAGTCGAAATATCAGAGAATTGGCGCAGAAAATACGGGACTTGGACGCAAAAGATGGATTCAGATCTCAGAGTACAGCCCTTTTCTTGGAAAAACTATACAGTGTCGGTTTGATTCCCACCAAACAGAACCTCTCTCTCGCAAATGAAGTGTCAGCATCTGCATTCTGCAGGAGGCGGCTTCCCACAATCATGCTGAAACTGCGCATGGCTCAGAACCTAAGGAACGCCATCACCTTCATTGAGCAGGGCCATATTCGTGTTGGGCCAGAAGTCATCACTGATCCTGCATTTCTTGTAACAAGAAATATGGAAGATTTTGTCACATGGGTGGATTCCTCCAAGATCAAACAACATGTC

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032040 small-subunit processome cellular_component
GO:0034457 Mpp10 complex cellular_component
GO:0019843 rRNA binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1062 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Orthologous to human IMP3 (IMP U3 small nucleolar ribonucleoprotein 3).

Ensembl:

ensembl_id ENSDART00000180213

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031924 lncRNA downstream 120597 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031921 lncRNA downstream 179438 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00033778 lncRNA downstream 235769 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031942 lncRNA upstream 438974 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031950 lncRNA upstream 632316 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031964 lncRNA upstream 966302 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031975 lncRNA upstream 1261178 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031976 lncRNA upstream 1340805 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031928 mRNA downstream 12257 9958081 ~ 9971728 (-) False XLOC_016183
TCONS_00031927 mRNA downstream 12334 9958081 ~ 9971651 (-) False XLOC_016183
TCONS_00031929 mRNA downstream 12376 9959060 ~ 9971609 (-) True XLOC_016183
TCONS_00031926 mRNA downstream 68115 9869058 ~ 9915870 (-) True XLOC_016182
TCONS_00031925 mRNA downstream 68171 9868601 ~ 9915814 (-) False XLOC_016182
TCONS_00031933 mRNA upstream 66181 10056100 ~ 10062575 (-) True XLOC_016186
TCONS_00031934 mRNA upstream 97415 10087334 ~ 10098191 (-) True XLOC_016187
TCONS_00031935 mRNA upstream 193721 10183640 ~ 10188598 (-) False XLOC_016188
TCONS_00031936 mRNA upstream 195411 10185330 ~ 10192487 (-) False XLOC_016188
TCONS_00031937 mRNA upstream 195436 10185355 ~ 10192459 (-) True XLOC_016188
TCONS_00031915 other downstream 236554 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 236992 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 295800 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 439824 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 577310 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031958 other upstream 915143 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 1666634 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 2234504 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 3262233 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 5004474 14994393 ~ 14994490 (-) True XLOC_016250

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01855598_01856473.mRNA True 712 mRNA 0.37 4 CI01000004 1855351 ~ 1856524 (+)