RNA id: TCONS_00031937


Basic Information

Item Value
RNA id TCONS_00031937
length 2663
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_016188
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10183640 ~ 10192487 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAGGGGACGATTTGGACGCGCTTGATACTTAGCGGATACATTTGAATGGGCTCTTAGACTTTGAGAAACGAGATAAGGACATCTGGGAAATACTCCGAGCTAGAAGCAAGAAAATATCAAGAGAGACACTGGATAAACGACAAGACTGGGATAAGTGTGAATCATGCAGCACTACGGAGTGAACGGATACTCTCTCCACGCCATGAACTCACTGAGCGCCATGTACAACCTGCATCAACAGGCGGCGCAGCAAGCGCAGCACGCGCCTGATTACCGGCCGTCCGTTCACGCACTCACCCTGGCAGAGAGGCTGGCTGATATCATACTTGAGGCTCGCTACGGCTCTCAGCATCGCAAACAACGGCGCAGTCGCACCGCTTTCACGGCCCAGCAGCTGGAGGCTTTGGAAAAGACTTTCCAGAAGACTCACTACCCAGATGTGGTGATGCGGGAGCGGCTAGCAATGTGCACCAACTTACCCGAGGCACGCGTGCAGGTATGGTTCAAGAACCGCCGGGCTAAGTTTCGCAAGAAGCAGCGAAGCCTCCAAAAAGAGCAACTTCAAAAGCAGAAAGATGTCTCGACAGATGGAGCCCTAGCAGCAAGCGATAAGGATGAAGCTCCCTCCACCTTAAATCTTGAGAACCAGCCACCTTCGTCcacctcctcttcttcctccatGGAGGCAGAGGCAGCTCCTCATGCCCTGGGATCAGAACTTAGTGTTGAGCTTAATGTGACATCAGCAGAGCAGTCAGGCAGCGAATCAGCCACAGAGGACAATGCAACCGACAAGGAAGAGGAGATAAAGCAGCACAGAGAAGATCTGAAGGTTGAGAAGGAACCAGCACCTGGAAACCTTTCTCCTCTTTGCAAACGTCTTAGCCCCAAACCAGATTCTCCTCTTGGCTCCCCAGCCATCTCCTCTTCCTCTAGCGGGGTGACGGGCGGGATCTCTCAGAGTCACTCGTACTCCTCGTCTCCGCTGAGCCTCTTCCGTCTGCAGGAGCAGTTTCGCCAGCATATGGCTGCTACCAACAACCTAGTTCACTATCCGTCTTTCGACATGGCGACCCCATCATCTATACCATACCTAGGCATGAACGTCAACATGCCAGCACCCCTGGGTTCCCTCCCGTGCCAGTCCTACTATCAGTCTCTATCTCACCACGCGCAGCAGGTTTGGAACAGCCCCCTGCTGCAGGCCTCTGGAGGCCTTCCTAGCCACAACAGCAAGACCACCAGCATTGAGAACCTACGTTTGCGAGCCAAACAACATGCGGCATCACTGGGCCTGGACACACTGCCCAACTGAGCAGGAGACTGAAAACTACTGAGCAAGGGAACATCTCTCTACCACTACTAACACGCCAGCTGGACTTCTAAAGTTAGGGCCAATCCTCAATAAAACGAAATATTGTTTTACACTTAAAAATAAGGGTTCTTTATCAGCATTGATGATTTAATCAAGAATCTCCATGGAAGCATTTCTTCACACAAAAAAAGgctgtaaaaatgtttataaaagagTGTTCATCTAAGAACTGTTCACCAAACTACAAACCGTATCTCTTGGAACCTTTACTTTTAAGAGTTAATTTCTCTTGACTACACTAAAGTTTCAGAAGAGGCAAATCGAGACTTGTTTCCAATTTAGAGGGCTTGTTAATtatgaatctctcatttaattCATCAAGATATTAAAATCACCAGTTTGCTTAAAAAGACAAGCAGGCCCTGGATTAGGATTAGTGTTATTTATACGTTTTGGACAGGCTTAGATGTTTGATATAAGCACTTTTTTCAGAGAGGATCTCGGCGGGTTGCATGCACTACACAGCAGAATCTGaactttcttttaatttaattatcacgCTTCTCAAATTACACACCACAGAAATTACCTTGTAAATGTAAATCTTGCACAACTAAATAGATTAATTAAACCTAACCTGTTTAATGGTCAGGATTAAACCACGGTAAATTGAGGATGGTTGGGTAATGAGCAAATTATTTCATTGACTACATATGCAAAGCTTTTAATTACATGTAGCCTCAGGCGGAGGAAGGAATGCAATTATAGACCATGGATATCATTGGAGATTGCCATATTAACACTCAGAGGGAAAATACTCTCATGAACACTAGCTTACACGCATATAAATGTTGCAACAGGAACAAACGCTGAATAGTGGTCAGAACAGGAAAGCAAAGCACTTTCATGTATGGCAGCTCCCCCCTCTCTCTGCTCATCCGTTACCTCACAGTGCTGAGCTCTCATTGTGtttgtaaagtattttaatatgtaaaatacaaAGTCTTTATAAATGTTTACTGGTAAGGCAAAAATGTAAAAGTTCTATGTTTTAGATTGAAAAGAATTTAACCCTGTGATGATTCTGGTAGCCGTCTCTTTGTAAGATTGTACTGAGTGGGCCGCACAGCCCGCCTGCGTCACCCCCAGATTATTTAACCTATACAGTCTGGTCGTCTATGTAGCTCTTTCATCGTCACTGTGGACATCAATATACAGTCACTCACGTCACTACGCAAAGTGGTGAATTTGTAGCCTATATTGGTGGAGAGTGTTCCAGAAGTATACACATTTTTCCCTATGTCAACTGTAGATTTACAAACTTGTAAAATAAAACTTCAATAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043010 camera-type eye development biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0007275 multicellular organism development biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0001654 eye development biological_process
GO:0061074 regulation of neural retina development biological_process
GO:0007420 brain development biological_process
GO:0030901 midbrain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020117-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in brain development; eye development; and negative regulation of transcription, DNA-templated. Acts upstream of or within several processes, including nervous system development; regulation of neural retina development; and retina development in camera-type eye. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural keel; anterior neural rod; immature eye; nervous system; and presumptive diencephalon. Orthologous to human DMBX1 (diencephalon/mesencephalon homeobox 1).

Ensembl:

ensembl_id ENSDART00000128535

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031924 lncRNA downstream 321967 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031921 lncRNA downstream 380808 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00033778 lncRNA downstream 437139 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031942 lncRNA upstream 236434 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031950 lncRNA upstream 429776 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031964 lncRNA upstream 763762 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031975 lncRNA upstream 1058638 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031976 lncRNA upstream 1138265 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031934 mRNA downstream 87164 10087334 ~ 10098191 (-) True XLOC_016187
TCONS_00031933 mRNA downstream 122780 10056100 ~ 10062575 (-) True XLOC_016186
TCONS_00031930 mRNA downstream 170534 9961868 ~ 10014821 (-) True XLOC_016184
TCONS_00031938 mRNA upstream 94674 10287133 ~ 10338813 (-) False XLOC_016189
TCONS_00031939 mRNA upstream 98578 10291037 ~ 10338759 (-) True XLOC_016189
TCONS_00031940 mRNA upstream 149718 10342177 ~ 10386738 (-) True XLOC_016190
TCONS_00031941 mRNA upstream 204120 10396579 ~ 10450784 (-) False XLOC_016191
TCONS_00031944 mRNA upstream 275340 10467799 ~ 10563576 (-) False XLOC_016192
TCONS_00031915 other downstream 437924 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 438362 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 497170 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 641194 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 778680 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031958 other upstream 712603 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 1464094 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 2031964 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 3059693 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 4801934 14994393 ~ 14994490 (-) True XLOC_016250

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_03496175_03497985.mRNA True 2941 mRNA 0.43 4 CI01000004 3494746 ~ 3498384 (+)