RNA id: TCONS_00031943


Basic Information

Item Value
RNA id TCONS_00031943
length 4899
RNA type mRNA
GC content 0.49
exon number 26
gene id XLOC_016192
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10467799 ~ 10564019 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTCTTCATAACTGTCACCAATGTTGAGAGACAGCAGGGGTTTGGTAGAGGATGTTGTCACCTTGAGAAATCAACTGCGATTAACTGAGAAAAACCTACTATCAGTGGGTGAACAATTGAGTCAATCAGGAAATGACATCATTGGCGAGGATACTGATGTTGTGGAAGCGTTCCCAGGACGTCTTACTTTAGAGGACCTTCAGAATCCTGATCCTGTAGATTCACACCCTGAGCAACAAGCTTGTGCACATATCTTTGACTGCAGGtcAGTCAGAGACATGGAGGCAGAGACGTCTGTGCTCAGGCGAAAGCTCAACACTATCAGGCAGGAAAACGCCTCTCTGGTCCTGCAGAACCGGCAACTCATGGGTGACATAGAAGCTGCTCAGATGGAGTTAGCCAGCTCAAGGtcaaagATTCGCATGTTGGGATCCACTGTGGGAGCCCGGACCTCCAGTGTTTCTCACATGAAGGAGCAGATTCTGGGTCTAGAGGCTGAGCTGGACACCCTGACCAAGGCTTTAGAGTCTGCAGAGCAGAGGTTGGAAGTACGTGAGCAGACGTTGATGCAGAGTCACAGGCTGGTGGAGAAGCTGAGAGATGAGCTGAGAATCATTAAAGCCGAGCTAGCCGACAGAACACGTCTGGGGAAACGTGCGGAGCAGCAGAGAAACCAGGCCCTTCAAAATGCTGAGAAGCTCACGGTCACGTTTAAAGAATACAAAGAAGATGTTGCAGAAAAACTCAGAAAGGTGTTAGAGAGTGAAGATCAGCTGAAGATCAGTCTGATGGAGTGTGACCGAGAGAGAGAAGAGCTGGAGAGGAAGTGTACAGCGCTGGAGAGCGAGAAGGAAAATCTACTGCACAACCTCTGTGAGCTGAAAGAGGCTGTCAGTCGCTCTGAGTCTCTCTCCACTGAGCGTGTGCAGATGCAGTCTCAGCTCCAGCAGTTCTCAGATCAAATAAAACAGCTGCAGAAGGAGCTGGCGGAGAAGGAGGCTCAGCTGCAGGACATGGCAGGCCTGAGGAGGGAGAATGAAGACCTGCGGCTGCTCACAGCCTGTCAGGAGCAGAGAGTCGCTCAagcccacagagagagagagcaggaccGAGCCGAGCTGACCAGCCTGGAGTCTGTCCTGGACTTGCTACATCTGAGAGAGAATCGAGAGGGTGTGCTGTGTGTGAACCCTTGTTTGCTGCCTGCACTTTCTTACACAAACACCACTGAATCTCTCAGACACAAACCTGTAGGTGAGCGCTATCAGAAGCTTCTGGCGGTTCTTCAGATGGTTGAGAAGGAGAAGAGCCGTCAGGTCAGCGCTGCTCAGAGCCTGCAGGAGAGACTGAGCAGAGCCCAGGAAGAGATCTCCTCTCTGCAGAACTCCATCACTGAGAGAGCTTCTCACTACCATCAGCTCCACAACCAGCTCCTGGAAAAGGCTACACAGGCCACTGCCTTGGAGAAAGAGCTGAAAAAGAAGAATTTGCGTGTAGCCGTCCTAGAGAAACAGCTGCAGGAGAAGAGCTCTGCTTATTCACAGGCTGTAATGAAAACAGGGCAACTTGAACAAGACCTTCTGGAGAAGACCAGCAGCATTCAGCACTATCAGTCAGTCTTGAACAAGAAACAGAGGGAATATCAGCAGACTGTTGACAAAGTCAAGTTGGCGCAGTCACACAAATGCAAAGAAATGGAGGACGAAAGAGAGGTGttgcAGTTGTCTCTGGCTCAGAAACAGACAGAAATCGAGGAGCTTGAACAAAACTTGACTGATGTTCACCGAGAGAAGCAGGAGGCACAGCAGAGAGCAACCCTTCTGCAGAGCTTTATAGATCGGCTCACTGAGGATTTTGAAGCAAAATCTAAATGCAGCGAAGAAACACTTAGAAATGTGGAAGAACAAGCTGCTGACTCTGCTTCAAAGTTGAGGAGCCTGCAGTCTGAACTGTCTTCCTGCAAAGAGGAGCTGAGTGTTTATCTTCAACAGATGGAGGAGATTAAGAAACATCATGAGAAACAGCTGGAGGTGAAGAGCAGTGAGCTGTCACAGCTGCAGGAAGAGCTGAGGAGGAAATGTGAGGCTTATCAGAGCTCCAGTGAGGAGAACCTGCAGCTACAGCACTCCATCCAGAATCAGCACTGCATGCTGGAGGAGAGCACGTCACGCATCACACAGCTGGAGGAGAGTCAGAGTCTGCTGCAGAGCCAGGTGTCCCAGTTGGAGCAGGACTTGGAGAAGGAGCGCAGTGCCTTGTCTCAGGCTCTGAGGAAAAGGGAGAGGGAGGTAGAGGAGGTCAACCAGGAGGTGCAGAAGAAGGAGAGACAGGCTGCGGAGCTCTCCGGCTCCATAACgCAGTTGAGTTCAGAGATGAGTAAGTGTCGAGTGGAGCTTTCAGACATGGAGCTGGAGCTGCTGCGGTTGAGGAGAGACAGCAACACCAAAGCCTCACAGCTCGTGCAGATGGAGGAGACGCTCAAGGAGACCAAAGGACTGCTAGATAAAAAGAGTGAAATAGTTATAGACCTTGAGGAGAAGCTCCACCGCAGTGAGATGGACAGGAGAAACTCTCTGCAGCGAGCCCAGCTACTAGAGGGACAGTTAAAGGAGGTGCGTGGAGAGCTGGCAGACACCCTGGACCACCTGCAGGAGCTAAGCGATGTTCTGCAGCACACCCAACTGACATCAGATCAGCGGCAAGCGGCTATCGATAAACTGGCAGCAGAGCTCAGAGAGAGTCAGAGGGAGCTGGAGGAGAGGAACCATGAGGTGCTGGATCTGGACACTGCTCTGAAGGAGAGACAGGGGGAGCTGCAGCAGAGAGCACAGCTgCTGGGGCAGCTGGATGTGGCCATTAAAGATCACAAGCTGGAGATGGAGAAGAAGGTGGAGTTTTTACAGGAAGCTCTGGAGAAGGGCCAGAACGAGTTAAGGGAGAAAGACCAGCAGATGCAGTTCCTGACAGAACGCCTGGAGATACTGAAGTCACAACTGCAGGCCAAGGAGGACATGGACAAGGGTGCTGTAGGCCACAGCCAGCAGCTGCGTGTGTATCGCGAGCAGCTCCTGAAAACAGTGCAACAGTTACAGGAAGCACAATCCCGCTGCGACTCTCTAAACAGACAGATTGAGGAAATCACCCGACAAGCACATCAGAAGGAGAATGAAGTGGGTCAGCTGCGAGAGGAGTTGTGTGTGATGGAGAAACGCTCCGCACAAGCCGAGGTCAGACTCCAGGCCAGTGTTTCCACTCTGCAGCAGGAGCTTGAGCAGCAGAGGGAAGAGCACCGCAAAGAGGTGCACAGAAAGTTTCATCTTGGTTCTGGCTGGTCTGTTTTGCTGGACCTGACCCTTTCTTTTTCACTCTCACAGCTTTCAGCCCTGCAGCAGACGCGTGGGCAGCTGCTGATGGTGTCGGATCAGATCTCCAGCAGTTTGCGTAACTCTGGGGAGCAGCTGAGCCAGCGGCTGCAACAGGCCAGAGATCAGCTGGAGGAGGCCAGGTCTACCTCTGCGCGCCTACACGCTGAGCTTCACAACAAAGAACAGCTCCTGCAGAATGCTAATGAGAACCTGCTTATCAAGGAGTCAGAGATCGCTCGTCTTCAGACCAAACTTTCCAGCTTGAGCAGAGTCACAGACCTCCACAATATCACACTCCGTCACAAACCCagcactcctcctcctcctctttctcctcctcATAAAGACTCCATTCCTCAGGACCCTCCATCCTCCACACGCTCCAGCCTCTCCCCATGGCACAACACCTTCTCTGACGCCTCTCTGGAGCTTTCAGACAGTCTGAAGGCCAGTGTTCAGGCTGCCCTGCAGCCGCCATCCTCTCCGGTGCAGACCTGGCAGGGGCTGACCAGCCATGAGGCCTCCTGCTCCACAGACATGACCTTCAATCCACTCACATACATGCTGGACCAAGAGGAGCCAGAGGAAGCAGATCTAGACTCTCTCTCAGGTATGCTGAGGTTTGTTAACCAGACCCTGGCCCTCCAGGAGCAACAGTCCCTTCTTgacaacagcacacacacaacaggaacGTAATGAGGTATAAGAGCTTCGCAGATGTTCAAAACCTGACGATTCAAtcattttaagcaattttttatgAGTCTAAAAAGTAAGTGGATGAGTTTTGTTTATCGAGAACTGTTTGAGCTTGAACATGATAATAATGGACTCAACCACACCACAGATGCCTTGTGGAGGTTTTGTATTTAGCTGTATAATTTTAGGTTTACaaagttttatgttttatattgctAATTTATATTTTGTTGACCGATTgactaataataaaacttttcCATAAAGGTCATCTGTCTCGCTGTCATGCTTAACCACTCTGAATCATCTGGTTTCAGTGGTAAACTATATATTGCACGTAAAGAGGAAGTGTGCCGTAGTTGAAATGAGCTCAGCTGAATGACGGCACGCAGCTCTGTGCAtttacgtgtgtgtatgtgtgtgtgccctCCTGTGTTCATTTACACAGGTCTATTGTTTAGTGAAACAATAACCAATAtctgtgtgtatagtgtgtttgCTGGAGGTGGTTTACTTGTATTAGCCGCTCGTACACTGTTTGACAggtttatttttctgttgtttGGTTTGTACATTTGGTAACCAGCTAAATTCTCAGGGGGCAGTtctgtaatttaatttgtttaatttgtttaataatttaattgtaaCCCATAATTATTATTTAGTAGATCTAACTAGGTGACCTTACAAGATGGGGATTTTTCTTATAAACTTGACTTGAGAAAGCCTCATctgaatatttgaaaaagatttttacaTGAGGTGAATTGGAGAGAATGATGTTTTAGCATATTTCTAGCATATTCTAACATGTTGCTAGTGTGTTTCGGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5414 Orthologous to human CCDC18 (coiled-coil domain containing 18).

Ensembl:

ensembl_id ENSDART00000185818

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031942 lncRNA downstream 34951 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031924 lncRNA downstream 604411 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031921 lncRNA downstream 663252 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00033777 lncRNA downstream 719583 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031950 lncRNA upstream 58659 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031964 lncRNA upstream 392645 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031975 lncRNA upstream 687521 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031976 lncRNA upstream 767148 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031977 lncRNA upstream 773464 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00031941 mRNA downstream 17015 10396579 ~ 10450784 (-) False XLOC_016191
TCONS_00031940 mRNA downstream 81061 10342177 ~ 10386738 (-) True XLOC_016190
TCONS_00031938 mRNA downstream 128986 10287133 ~ 10338813 (-) False XLOC_016189
TCONS_00031939 mRNA downstream 129040 10291037 ~ 10338759 (-) True XLOC_016189
TCONS_00031937 mRNA downstream 275340 10185355 ~ 10192459 (-) True XLOC_016188
TCONS_00031946 mRNA upstream 34234 10597810 ~ 10600950 (-) True XLOC_016193
TCONS_00031947 mRNA upstream 39974 10603550 ~ 10641998 (-) False XLOC_016194
TCONS_00031948 mRNA upstream 41022 10604598 ~ 10632431 (-) False XLOC_016194
TCONS_00031949 mRNA upstream 44412 10607988 ~ 10631767 (-) False XLOC_016194
TCONS_00031951 mRNA upstream 123700 10687276 ~ 10703621 (-) True XLOC_016195
TCONS_00031915 other downstream 720368 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 720806 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 779614 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 923638 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 1061124 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031958 other upstream 341486 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 1092977 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 1660847 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 2688576 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 4430817 14994393 ~ 14994490 (-) True XLOC_016250

Expression Profile

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