RNA id: TCONS_00031950


Basic Information

Item Value
RNA id TCONS_00031950
length 946
lncRNA type retained_intron
GC content 0.47
exon number 6
gene id XLOC_016194
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10603550 ~ 10641998 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCGAGCGATCAAAAGCACCCGTTTACTACAGTCTGAAACACTTCAGGCGTTTGAATCATCTCCTAAAAGCAGCAGCACCACCTCGATTCACAGCGAAGCTCCGGCTGCCCGTTTATGTTGTAGTTCTTTGTGTTTGTGAGGCATTGTAACCCGGGAAAGTGACCGAATGAGAGACTCAGCAAGTGCAGATAACCTGGCCGCCCATCAAAATACTCCAAATCGCCAACACAAGTCCCCTGTGTCCTTGCCCCGATTTCCCTTGAAAGATGGGCTGACCGACACGACAAAGCTTGCTGGCAAGTTTGAGGAAGGGCAGGACGTCCTGGCCCGGTGGTCAGATGGCCTCTTTTACCTGGGAACCATCTCCAAGatagataaacataagCATCGCTGCTTTGTGATCTTTGAAGATCAGTCTAAGTCCTGGGTTCTGTGGAAGGACATACAAACagGGGACAGTGGAGGGGAAATGCTCTGCTCCATATGCCAGAATGAAAGCTCTGAACCCCCCAATGAAATTGTCATCTGTGACAAGTGTGGTCAAGGATACCATCAGCTTTGCCATGCTCCTGTAATTGACTCCAGTGTCATTGACTCTGATGACAAATGGCTCTGCAGACAGTGCGTGTTTGCCACAACAACAAAGAGAGGCGGTGCACTAAAGAAGGGGCCAAACGCCAAAGCCCTACAGGAAATGAAGCAGTCTCTACCATACGCCCTTGAAGAATTAATGTGGGACCAGGGCCACAAGACCAACATCCAGCAATGCTACTGCTACTGCGGTGGACCTGGAGAGTAAGCGTTACGATATTCATCTCTGAAAACTGCTGATATAGTTTTTCTcagaataaacattttatagAGCAGGTATTTGAAGGATTAGTTCACTTTAAGAATAAGTAACTGTTTACATGACGACATTTTAACCCCAAATTAGGGAAACT

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060512-94 Predicted to enable DNA binding activity; chromatin binding activity; and methylated histone binding activity. Predicted to be involved in chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human MTF2 (metal response element binding transcription factor 2).

Ensembl:

ensembl_id ENSDART00000111298

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031942 lncRNA downstream 189387 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031924 lncRNA downstream 758847 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031921 lncRNA downstream 817688 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00033778 lncRNA downstream 874019 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031964 lncRNA upstream 323844 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031975 lncRNA upstream 618720 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031976 lncRNA upstream 698347 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031977 lncRNA upstream 704663 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00033779 lncRNA upstream 924598 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00031946 mRNA downstream 21285 10597810 ~ 10600950 (-) True XLOC_016193
TCONS_00031945 mRNA downstream 58216 10468362 ~ 10564019 (-) True XLOC_016192
TCONS_00031944 mRNA downstream 58659 10467799 ~ 10563576 (-) False XLOC_016192
TCONS_00031943 mRNA downstream 58659 10467799 ~ 10563576 (-) False XLOC_016192
TCONS_00031941 mRNA downstream 171451 10396579 ~ 10450784 (-) False XLOC_016191
TCONS_00031951 mRNA upstream 54899 10687276 ~ 10703621 (-) True XLOC_016195
TCONS_00031952 mRNA upstream 158498 10790875 ~ 10821053 (-) True XLOC_016196
TCONS_00031953 mRNA upstream 231565 10863942 ~ 10877765 (-) False XLOC_016197
TCONS_00031955 mRNA upstream 231804 10864181 ~ 10877228 (-) False XLOC_016197
TCONS_00031954 mRNA upstream 231804 10864181 ~ 10877228 (-) True XLOC_016197
TCONS_00031915 other downstream 874804 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 875242 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 934050 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 1078074 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 1215560 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031958 other upstream 272685 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 1024176 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 1592046 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 2619775 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 4362016 14994393 ~ 14994490 (-) True XLOC_016250

Expression Profile

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