RNA id: TCONS_00031955


Basic Information

Item Value
RNA id TCONS_00031955
length 1476
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_016197
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10863942 ~ 10877765 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAGAAGCAAATACTGTCCAGAGAAGCTCCCATCGCAGTGTTGAAAAGGGCAGAAGTCGACACAAAATTTCCAGAGATGTTGAGACGGAAATTGCATATCTGTATGAAGTTCTGCCACAGCTTTCTCGAATATTTCGCATCATAGATAAGATTGGAGAAgGTACTTTTAGTTCGGTATATTTGGCTGAGGCACAGATGACGGACAGTTCAAGGAGGTTGTTTGCATTGAAACATCTGATCCCTACCAGTCATCCTGTGCGCATCGCTGCTGAGCTCCAGTGCCTGACTGTTGCTGGAGGGACAGAAAATGTGATGGGAGTCACATACTGCTTCAGGAAGGAGCATCACGTGGTCATAGTCATGCCATACATGGAGCATCAGACCTTTGTGGATATTGTTGGCTTGTTAAGTTTTGAGGATGTGAGGCATTACATCTATCATCTGCTCAAAGCCTTGAAGCACATTCACAAGTTTGGCATCATCCACAGAGACATCAAACCAACCAATTTCCTGTTCAATCGACAGAAGAGGGAgTATGCGCTGGTGGATTTTGGCCTGGCTCAGGGCACTCCTGACACCCAGATCGAACTGCTGAAGGAACTGATGGGACTTGATAAAGCACCACGGTCTGTATTTGGGGAGAAAAGCATAAACAGCACAAACTCTCATAAACCAGGCTCTGACAAAGTTGAGGGATTGCTTTCAAAGCCCAAAAAGGAGGAAGTAATTCCACGCAAGATTGTTTCTGCCAAACATCGCTCCGTCCCTGTCAGAGCACCATTAAATCAGAAACAGAAACTTCCGGCTGAGAGTCAGAAACCTAAACCTGCTGCCGTCAACCCCCTACTCACCTGCAACTGCTACATGACTGACCGCGTCTGCAACATCTGCCTGTCCAGGAAACAGCAGGTGGCTCCGAGGGCTGGTACCCCTGGGTTTAGGGCTCCTGAGGTTCTAACCAAGTGTCCCAACCAGGGAACAGCGATTGACATGTGGTCAGCAGGGGTCATACTGTTGTCTCTACTAAGTGGCAGATATCCTTTCTTCAAAGCCAATGACGATCTGATCGCTCTTACTCAGATCATGACCATCCGAGGGTCTAAAGAGACTATAGAGGCTGCAAAGACCTTTGGTAAATCCATAGTGTGCAGCCGTGAGCTTCCTCGGCTGGACCTCAGGATTCTCTGCGAGACTCTGAGAGGTTTGCGATCGTGGGATGATGCCTCTCTTCCTGCTGAGTTTCAAGCCTCACATAATCCAGCAGAAGAAAAGGAGGAAGCGGAGAGTCCTGCACTGAAAAGCACAGGCTCCCGTTTGTGTAGAAGCAGTGCAGAGCTGAAGGAGATCGGCTGGGACAGAGTGCCGGATGAGGTGTACGATCTACTCGATAAACTGTTAGATTTAAACCCCGCTACCAGGATCACAGCCTCGACGGCACTGCAGCATCCACTCTTCAAAGATATGAGTGAGTAG

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko01001 Protein kinases
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-041114-113 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in double-strand break repair via break-induced replication and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CDC7 (cell division cycle 7).

Ensembl:

ensembl_id ENSDART00000138718

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031950 lncRNA downstream 231804 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031942 lncRNA downstream 431333 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031924 lncRNA downstream 1000793 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031921 lncRNA downstream 1059634 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00031911 lncRNA downstream 1115965 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031964 lncRNA upstream 78993 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031975 lncRNA upstream 373869 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031976 lncRNA upstream 453496 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031977 lncRNA upstream 459812 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00033779 lncRNA upstream 679747 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00031952 mRNA downstream 43128 10790875 ~ 10821053 (-) True XLOC_016196
TCONS_00031951 mRNA downstream 160560 10687276 ~ 10703621 (-) True XLOC_016195
TCONS_00031947 mRNA downstream 222183 10603550 ~ 10641998 (-) False XLOC_016194
TCONS_00031956 mRNA upstream 3940 10881168 ~ 10906854 (-) False XLOC_016198
TCONS_00031957 mRNA upstream 4117 10881345 ~ 10896745 (-) True XLOC_016198
TCONS_00031959 mRNA upstream 57251 10934479 ~ 11027258 (-) False XLOC_016200
TCONS_00031960 mRNA upstream 58045 10935273 ~ 11027365 (-) False XLOC_016200
TCONS_00031961 mRNA upstream 58045 10935273 ~ 11027410 (-) False XLOC_016200
TCONS_00031915 other downstream 1116750 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 1117188 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 1175996 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 1320020 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 1457506 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031958 other upstream 27834 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 779325 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 1347195 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 2374924 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 4117165 14994393 ~ 14994490 (-) True XLOC_016250

Expression Profile

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