RNA id: TCONS_00031960


Basic Information

Item Value
RNA id TCONS_00031960
length 1329
RNA type mRNA
GC content 0.54
exon number 18
gene id XLOC_016200
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10934479 ~ 11027410 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATCATGCGGACGGGGCCCCGCCCATAGTTCATGATCTGGCTGTGGCAGGGTCGGTTGAAGCGGATGGGGTCAGAGGCGGGCTGCACGTTGACAGCTGGAGCATAAGGAAGCATCGCAGTCAAGCTGGCAGACGCGTTTATTTTCAGCCACAGACATGTTCGCCAAAGGTAAAGGGACCGCGGTGCCATCGGACGGGCAGGCTCGGGAAAAaTTGGCATTATATGTCTATGAATATTTGTTGCACGTGGGAGCTCAGAAATCCGCACAGACGTTTTTATCAGAGATAAGATGGGAGAAGAACATAACCCTGGGTGAACCGCCAGGCTTTCTGCACTCTTGGTGGTGTGTGTTTTGGGACCTGTACTGCGCAGCACCCGAGCGAAGGGACACATGTGATCACTCCAGTGAAGCGAAGGCCTTCCACGACTATAGCGCAGCTGCAGCACCAAGTCCAGTACTGGGCAACTTGCCCCCCGGTGATGGGATGCCAGGCGGCCCTATACCTCCCGGATTCTTTCAGCAGGGACCCCCTGGTTCCCAACCCTCCCCTCACGCTCAGCTCCCTCCAAACGCTAACATGATGGCCGCGCACGGACAGCCATTTATGTCACCTCGCTATGCTGGAGGACCTCGACCGCCCATGAGAATGGGTAACCCGCCTCCAGGTGGACAGCCTTTACCTCCAAATATGATGGACCCTACAAGACCAACAGGCCATCCAAACCTGGCATCCATGCAGAGAATGAACGCTCCACGAGGAATGGGCCCAATGGGACCAGGACCACAGTCTGACCCATGGTTATCACTACAGAACTATGGTGGAGGAATGAGGCCTCCAAACTCTATGGGGCCGGGAATGCCAGGAGTAAACATGGTAGCAGGAGCTGGCAGACCGTGGCCGAATCCTAATAATGGAAACACGATCTCATATTCCTCTTCATCCCCAGGAACATATGTGGGTCCTCCAGGAGGAGCAGGAGGTGGTGGATGTCCTCCAGGAACACCTATCATGCCAAGTCCAGCAGACTCCACTAACTCGGGTGAAAACCTCTACACATTGATAAACTCAGTGCCACCAGGAGGAAACAGATCCAGTTTTACTATGGGTCCGGGGTCAGATGGTCCAATGGGAGGACTGGAGCCACATCATATGAATGGATCATTAGGTTCAGGTGACATCGATGGACTCACAAAGAACTCCCCTAATAATCTGAGTGGCCTGAGCAACCCTCCAGGAACACCACGAGACGACGCTGAACTGAGCGGAAGCTTCCTGCACTCCTTCCAGAATGAAAATTACTCACCAACAATGACAATGAGTGTGTGA

Function

GO:

id name namespace
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-484 Predicted to enable single-stranded DNA binding activity. Acts upstream of or within peripheral nervous system neuron axonogenesis. Predicted to be active in nucleus. Is expressed in Rohon-Beard neurons; trigeminal ganglion; and trigeminal placode. Orthologous to human SSBP3 (single stranded DNA binding protein 3).

Ensembl:

ensembl_id ENSDART00000193824

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031950 lncRNA downstream 302896 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031942 lncRNA downstream 502425 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031924 lncRNA downstream 1071885 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031921 lncRNA downstream 1130726 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00031911 lncRNA downstream 1187057 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031975 lncRNA upstream 223732 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031976 lncRNA upstream 303359 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031977 lncRNA upstream 309675 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00033779 lncRNA upstream 529610 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00031984 lncRNA upstream 733461 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00031956 mRNA downstream 28419 10881168 ~ 10906854 (-) False XLOC_016198
TCONS_00031957 mRNA downstream 38528 10881345 ~ 10896745 (-) True XLOC_016198
TCONS_00031953 mRNA downstream 57508 10863942 ~ 10877765 (-) False XLOC_016197
TCONS_00031955 mRNA downstream 58045 10864181 ~ 10877228 (-) False XLOC_016197
TCONS_00031954 mRNA downstream 58045 10864181 ~ 10877228 (-) True XLOC_016197
TCONS_00031965 mRNA upstream 41690 11069055 ~ 11082914 (-) True XLOC_016201
TCONS_00031966 mRNA upstream 55946 11083311 ~ 11096489 (-) False XLOC_016202
TCONS_00031967 mRNA upstream 59709 11087074 ~ 11101329 (-) False XLOC_016202
TCONS_00031968 mRNA upstream 73248 11100613 ~ 11120220 (-) False XLOC_016202
TCONS_00031969 mRNA upstream 75871 11103236 ~ 11119399 (-) False XLOC_016202
TCONS_00031958 other downstream 30094 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 1187842 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 1188280 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 1247088 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 1391112 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031983 other upstream 629188 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 1197058 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 2224787 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 3967028 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 4001281 15028646 ~ 15033121 (-) True XLOC_016251

Expression Profile

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