RNA id: TCONS_00031973


Basic Information

Item Value
RNA id TCONS_00031973
length 1903
RNA type mRNA
GC content 0.48
exon number 18
gene id XLOC_016203
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11216814 ~ 11468654 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGAAAGCCATATTATTCTACTTCAACATACTGAAATGTGCCAGTCCTGCTGTCCTGATAAACCTCCAGTGCCCTACTACTCAGATGTGTGTCTCCAAGTGCCCGGATCGATTTGCAACGTACACAGATATGCAGCTACTTTATAGATTCAACAAGAGCCACTGGGATTACTATAAACAGTTCTGCAAGCCAGGCTTCAATAACCCCCAAAAGTCAGTGGCACAAGTGCTGCGAGATGAGGACTGTCCGTCAATGATAGTGCCAAGCCGACCATTTTTACAGCGCTGCTTCCCAGACTTCATCACCAGAAATGGCACCCTAACTGTCGCTAACAAAACCGCTTTCAAAGACGCACTGGACACGGCCAGAAGTGTGACTGAACTTAGAGATGCAGCCAATGGTATTACAAGTATACACGAGGCCAAAGAAGTGGGAATGAAAATTGTGGAGGATTACGCCAGCTGCTGGTACTGGATAGTGATAGGGCTGTTCATAGCGCTGGTCATCAGTCTGATCTTCATCCTGTTGCTGCGATTCACTGCAGGCTTCCTCCTCTGGTTCATCATCTTCGCTGTCATCCTGCTTGTGGCCTACGGAATCTGGCACTGTTACTGGGAGTTCGCTGTTCTCAGGGAGACTCCTGGAGCAGACGTCACCATCTCTGACATCGGCTTCCAGACGGACCTCCACGTCTACCTACAACTCAGTCAGACCTGGCTAGTCTTCATGGTGACTCTGGGTTTGACTGAAGCCTCCATAGTTTTGATGCTCATATTCCTGAGAAAGCGGGTTCGCATTGCTATCGCTCTGCTCCGAGAGGGTAGCAGGGCCATCAGTTACATCATGTCTGCTCTGTTCTATCCCATCATTACCTTTGTGCTGCTTGCCATCTGTATCTCCTACTGGGCCATGACTGCACTatttcttgcatcttctggtGATGCTGTTTACAAAGTTGCATCAGGTAATCCCAACTGCAAGTACGCCAACCAAACCTGCAGTCCTGAGAGCTTCAACAGGACCAACATCACCAAGCAGTGTCCCGGTGCTCAGTGTCTTTTTGCCTTTTACGGAGGGGAGAGCTTGTACCATCGATATATCTTCATCCTCCAGCTCTGTAATCTGCTGGTCTTCCTCTGGCTGGTTAATTTCACCATTGCTCTAGGACAGTGCACCGTGGCAGGGGCTTTCGCCTCATATTACTGGGCTCGGAGAAAGCCTGCAGACATCCCACCCTGCCCTGTGTTCTCCTCTTTTTCCAGGGCTTTACGgtaCCACACAGGGTCTCTTGCTTTTGGATCTCTGATCTTAGCGGTGGTTCAACTCATCCGTGTCATTCTGGAATATCTGGACCACAAACTTAAAGGAGCTCACAATGCATTTGCACGGTTCCTGCTCTGCTGTCTTAAGTGCTGCTTCTGGTGTCTGGAGCGATTTATACGCTTTATGAACAGGAACGCGTATATAATGATTGCTATTTATGGAAAGAACTTCTGCACGTCAGCGCGGGAGGCGTTCTATTTACTGATGAGGAATGTAGTGAGGGTGGCAGTGTTGGACAAAGTCACAGATTTCTTACTCTTTCTGGGGAAACTATTGATAGCAGGGAGTGTTGGTGTTATTGCCTTCTTCCTCTTTACACGCAAGATACCCATCATCCAGGAAGAGGTTCCAGTGTTGAATTACTACTGCGTGCCTCTCTTGACAGTAATACTGGGTTCATACTTGATTGCGCACAGCTTCTTCAGTGTCTATGCAATGTGTGTGGACACCTTGTTCCTCTGCTTCTGCGAAGACTTAGAAAGAAATGACGGGACGACAGCCAAGCCTTTCTTCATGTCTCCTGGCCTGAAAAGAATTCTGGGAAAGGCTGAGCAAAGCCCCAAAAAGTCACgtggataa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-333 Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC44A5 (solute carrier family 44 member 5).

Ensembl:

ensembl_id ENSDART00000165803

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031964 lncRNA downstream 189767 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031950 lncRNA downstream 584581 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031942 lncRNA downstream 784110 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031924 lncRNA downstream 1353570 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031921 lncRNA downstream 1412411 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00031976 lncRNA upstream 72177 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031977 lncRNA upstream 78493 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00033779 lncRNA upstream 298428 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00031984 lncRNA upstream 502279 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00031986 lncRNA upstream 717714 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00031968 mRNA downstream 96738 11100613 ~ 11120220 (-) False XLOC_016202
TCONS_00031969 mRNA downstream 97559 11103236 ~ 11119399 (-) False XLOC_016202
TCONS_00031971 mRNA downstream 97655 11110269 ~ 11119303 (-) True XLOC_016202
TCONS_00031970 mRNA downstream 97862 11104645 ~ 11119096 (-) False XLOC_016202
TCONS_00031967 mRNA downstream 115629 11087074 ~ 11101329 (-) False XLOC_016202
TCONS_00031978 mRNA upstream 224525 11483072 ~ 11504347 (-) False XLOC_016206
TCONS_00031979 mRNA upstream 224629 11483176 ~ 11504778 (-) True XLOC_016206
TCONS_00031980 mRNA upstream 250144 11508691 ~ 11512819 (-) True XLOC_016207
TCONS_00031981 mRNA upstream 374706 11633253 ~ 11648731 (-) True XLOC_016209
TCONS_00031982 mRNA upstream 392629 11651176 ~ 11662851 (-) False XLOC_016210
TCONS_00031958 other downstream 311779 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 1469527 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 1469965 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 1528773 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 1672797 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031983 other upstream 398006 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 965876 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 1993605 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 3735846 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 3770099 15028646 ~ 15033121 (-) True XLOC_016251

Expression Profile

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