RNA id: XM_021605605.2


Basic Information

Item Value
RNA id XM_021605605.2
length 3704
RNA type mRNA
GC content 0.52
exon number 23
gene id ehmt1a
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21691111 ~ 21701749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGTGCAGAAGGAACCAATAGAACAGCAGCTATTGTCACATGACCGTGGCTGAACGTGTGCGCCGGGTGGGGAAAGGAAGGGGAAGCAGTGTACTTTGGCTCGGTTCTTTTTCCCTGCCCCCGTCTTACTCTCGCTCAACAACTAAGGCCATCGAGAAAGCAGGTGACGATTTTGGAGAGGCCAGAGTATTCCTCCAGGACAGCCATGGAGCGCAGGGGAGTCAGTCAGGAATCAGAGGCAGGGAAAAGACATCCTAACCCCCGCTCTGTGACACCCACAGGGGCCAAGGGGAAGAAGGCTCTGAGTGCTAAATCGCACGTGAACAAAAAATCCAAAGCTAAGATGACATCTGTTCACGGCTCAGTCGCTGGGTCCAATGGTTTTATTCTGCATAAAAAACAAGCGAGGGCAACCCCTCAAAGGAAAGGTGGTTCACCCCATGGACCAAGCAAAACCCCTCCAACTCCTGCAGACAGTGGTAGAGAAGCTGTTATAGCAGGGATCTCAGATGTACAAACTCCTAGTTATCCATGTCTGGACCCTGCCCCAACATCCAGTACACAGTGTGCATGGAAGACTATGGGCAAACCTGCCTGCAATCCGGCAGCACTGAAGCGTTTAAGCAGGGACGGAGCAGAGTCGAGCATGGAAGTCTTGGGGATGGAAAAGACAATGGCACCTTCCCACATCAAGCTACCTCCGAGCTGTAAAGGAAACAGGGTTGTCTCTACCAAGTCACAGCCAGGGtctaggaagaggaagaggaagatgggaATGTATAACTTTGTCCCTAAGAAAAAATCCAAGGTGTTGAAGAAAGAGAGCTCATTTGTAAAGGCAGGGCAAGAAAGCggcagagagaagagagtagacctGACGCACAGAGAGATTTGTGAAATAAAAGAAAGCCAAGCACTGTTAGCCGAGCAGTGTGAAGAAAAGGCAACTGACGTAAGCAAAGGAAACAAAATGGAGGAAGAGGACGGCTGCAGTAAGCAGGAATACACTGAACTGACTTTAGAATCTCTGGATCTGAAAGCCCAAGAGGAgctgttctctcctcctctctcagGCTTTCCAGCTGATGGTGAggtgacagagacagacctgTCTGAAGAGCTCCCTCTGTGCTGCTGTCGCATGGAGACCCCATGCAGTGGGGAGAGCCTGTCCCAGACTGAGCACACCTGCATGGCCACAGAGAGTGTGGATGGCCTGGTGAGTCGGTGTCAGAGGAGTGTGCTGAAGTATGAGATGATGCGTCCCTCCAACACAGTGCATCTGCTGGTTTTGTGTGAGGACCACAGAGCCGGCATGGTCAAGCACCAGTGCTGCCCTGGCTGTGGCCTCTTCTGCAGAGCGGGGAGCTTCATGGAGTGCAGACCGTATGGCAGCATCTCTCACCGTTTCCACCGTGGCTGTGCCTCAGTCATCAAGGCCCAGAGCTTCTGTCCCCACTGTGGAGAGGATGCCACCGGGGCCCAGGAAGTCACTGTTCCCAAAACCATCTCCAATCCTGTCACTGTTCCCAAAGCTGAACCTGTACTTCCTTCTGTGCCAGCTGTTCCTGCTGTTTACCCTGTGGCACTTCTTCCCGTTGTGTCCACCAGGCCCCTCATTCACAGGGCAAAGAAGACCACTGAGCTTGAGAGGAGTCTGGACACCTCCCCCAACAGGCACCTGAAGAGGGAGATGTTAGGTGATGGAAAGGAACCAGCTAAAACGTCACTGGAGagcatcctaatggccctggatgaTGAAAATATGAGGCCGAAGAAAGTAAAGTATCACACAAAGCAGCTGTACATCTCTGCCCATCACGGAGAGCTCCAGAAAGTCATCCATCTGCTGGTGGATGGAAAAGACCCCAACTACCTGATGTACAGCCAGAACAAGAGGACCCCTCTACATGCTGCAGCATCTGAAGGACACCAGGAGGTCTGTCACATGCTCGTCCAGGCTGGAGCTAACCTGGACATGTTTGATGAGGAGCAGAGAACCCCCCTGATGGACGCCTGCGAGAACAACCATCTGGACACGGTCAAGTACCTGCTGAGGGCCGGGGCAGCGCTCAGCCATAAGGATATTAAGGGCTCAACCTGTCTGCATCTGGCTGCTAAACTTGGACATTACGATGTAGTTCAACATCTCCTGTCCAAGGCATCCAAGCAGGTCAACTGTCAGGATGACGGTGGGTGGACCCCCATCACCTGGGCTATAGAGTACAAGCACAGAGAGCTGGTCCTATTGCTGCTCTCCAGAGGGGCTGATGTTAACATCCGAGACAAGGAAGAGAACATTTGCCTCCACTGGGCAGCCCTGTCTGGCTCCAATGACATCGCTCAGATTCTGCTTGATGCCAGATGTGACCTCCAGGCAGTCAACGTCCATGGGGACTCAACTCTACACATCGCTGCCAGGGAGAATCAACTGGAATGTGTGACACTGCTTCTGTCCCAAGGAGCAGATGTGAACCTgaagaacagagagggggagacccCTCTGGACTGCTGTATCTACAACTCTAAGGTGTGGGTGTCCCTGAAAACTAATAAGAAGCTGACAGATGCCAGGAGAAGCAGGGACAGTCATAGGGAGAAGGTCCTTAGCAGGGACATCTCTCGGGGATATGAGGCAGTCCCCATCGCCTGTGTGAACGGGGTGGACAGTGACTCCTGTCCTGATAACTACAAATACGTCCCTGACAGCTGTGTTACCTCCCCAATTAATATAGACAAGGACATCACTCATTTACAGCATTGTGTATGTACAGATGACTGCTCTTCAAATAGCTGCATGTGTGCCCAGCTCAGCCTGCGCTGTTGGTATGACAAAGAGGGGCGTCTGCCTCTGGAGTTCTGTCAAAAGGAGCCTCCGGTCCTGTTTGAGTGTAACCACGCCTGCTCTTGTTGGAGGAGCTGCAGGAACCGTGTGGTTCAGAATGGACTTAGGGCTCGGCTGCAGCTCTATAAAACCCAGAGGATGGGCTGGGGTGTGAGGGCACTGCAGGATATTCCTCAAGGAACTTTCATTTGCGAGTATGTGGGTGAAATTATTACTGATGCCGAGGCAGATGGCAGGGAAAATGACTCATTCCTCTTCACCCTGGACAATAAGGTGGGTGATGTGCACTGTATTGATGCGCGACTCTTTGGCAACATTGGCCGGTTTATTAACCACCTGTGTGAACCTAACCTGCTAGCAGTCCGAGTGTTCACCATGCATCAGGACCTTCGGTTTCCACGCATTGCATTCTTCTCCAGAAAGCCCATTCAGTCAGGCGATCAGATTGGGTTTGACTACGGTGATCACTTCTGGAAGGTCAAGAGCAAGTATTACAGCTGCCAGTGCTTCTCTCCAAGGTGTAGACACTCGTCAGCCGCTAGAGCCCAGAGCTTAGAGAGGGTGAccagcccagccccagcccaacAGTCATGTGCCCATACTGCCGTAACACAATCATAACACCCCTATGCCACCTCGGTCCTCCCCCAGCCATGGTGGGGATCTTTCTCTCCCTTATCACCACTATGACTCCTTTTTTAAATGTAGACTGATATGAAATGTCATTTTAATGGCTTTGCAGACAGAAATCAAATGCTAAGGGTAGCCTAGCCCTAGACTGTGACAAATGCTCACCTTTTCCATGTATCTTTTTTTAATTAAGTGTGCAATATAGTAATAAAGTGCATTATAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551154 lncRNA downstream 144666 21518135 ~ 21546445 (-) True G484929
TU551104 lncRNA downstream 150692 21421212 ~ 21540419 (-) True G484888
TU551127 lncRNA downstream 236972 21451333 ~ 21454139 (-) True G484904
TU551077 lncRNA downstream 303934 21386796 ~ 21387177 (-) True G484863
TU551076 lncRNA downstream 306650 21384189 ~ 21384461 (-) True G484862
TU551558 lncRNA upstream 75195 21776944 ~ 21778023 (-) True LOC110525119
TU551578 lncRNA upstream 106672 21808421 ~ 21808697 (-) True G485307
TU551542 lncRNA upstream 125851 21827600 ~ 21828319 (-) True G485275
TU551549 lncRNA upstream 126928 21828677 ~ 21829570 (-) False G485278
TU551548 lncRNA upstream 127297 21829046 ~ 21829752 (-) True G485278
XM_036979605.1 mRNA downstream 1970 21499304 ~ 21689141 (-) True cacna1ba
XM_036980266.1 mRNA downstream 197188 21464228 ~ 21493923 (-) True si:dkey-61l1.4
XM_021605601.2 mRNA downstream 227144 21455398 ~ 21463967 (-) False man1b1b
XM_021605603.2 mRNA downstream 227144 21455398 ~ 21463967 (-) True man1b1b
XM_021605602.2 mRNA downstream 227145 21455398 ~ 21463966 (-) False man1b1b
XM_021605607.2 mRNA upstream 16666 21718415 ~ 21732524 (-) True LOC110525475
NM_001165145.2 mRNA upstream 33940 21735689 ~ 21737605 (-) True p2ry2
XM_021605608.2 mRNA upstream 36619 21738368 ~ 21740331 (-) True LOC110525477
XM_021605610.2 mRNA upstream 43727 21745476 ~ 21764114 (-) False LOC110525478
XM_021605609.2 mRNA upstream 43727 21745476 ~ 21764115 (-) False LOC110525478
TU551114 other downstream 256392 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 392938 21296580 ~ 21298173 (-) True G484807
TU550627 other downstream 570044 21119976 ~ 21121067 (-) True LOC110525458
TU550546 other downstream 682029 21007016 ~ 21009082 (-) False G484409
TU551550 other upstream 131799 21833548 ~ 21834360 (-) True G485279
TU552186 other upstream 558885 22260634 ~ 22263353 (-) True G485864
TU552199 other upstream 578977 22280726 ~ 22281026 (-) True G485877
TU553165 other upstream 1135904 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 1549537 23251286 ~ 23253361 (-) False G486953

Expression Profile