RNA id: XM_021605608.2


Basic Information

Item Value
RNA id XM_021605608.2
length 1332
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110525477
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21738368 ~ 21740331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGACCAATTCTGCTTCTGCCTGTATATATTACATATCATGGTTGTGTGCGACTACAGCAGACCAAATCCTCATATAGAAGTCAGGGGAAGTAATAACTAGTTTGTCATTCAGGACTTGTCCCACTGATGGACTGCAAGCGCGAGCTTAAGTGAATGTTAATAGCCGGCATACCCCATACATTCCATCCTAAAATGAACAGCACAGTGTCTCCGTCCGTGTTGCCTCTGGACAACAGAAGTCTCTCTGAGTCCTGTACAGTGGAACCCCAACACGTGTCCATCACTGTTTTCCTCCTCCTGGTTGTCCTGGTTGGTTTCTTCCTCAACAGTTTCAGTCTGTGGGTCTTCTGCTGCCGTATACCACAGTGGAGCTCTGGTACTGTCCTGCAGTTTCATTTGGCTGTCAGTGACACTGTTATCACACCAGTTGCACCATTAATGGCAACATACTTTGTTATGGGTAGCCACTGGCCCTTTGGAGCTTTTCTGTGCAAGCTGAAGATTGCCTTGCTGAGCATTCACTTCTATGGCAGTATCCTGTTCCTTACACTCATCAGCATTCATCGATATGTGGTAGTTGTCCAGTTTAAAAGGGGCTCCTGTATGAAACGAAAGGCGTTTGTTCAGAATCTGTGTGCTGGAGTCTGGCTGGTTTTGCTGGCTAAGGGAATTGCCTGTTTCTTCTTATTGAACACAAGTCCAATGGGAAACCGCACACAATGTCTCAGCATTCATCAGGAAAAATACATTGACGTCTACTTCGCCATCAACTTCGTTATGCTCATCCCTGGGTTCCTGCTGCCTCTCTCAGTGGCAGTGACCTGCTATGTTCAGCTAGCAAGATCAATGTCTCGTATCAATATCAACATGTCCAAGGGCCGTGATATAAAGGCCAAGTCACGTAAAATGGTGGCCATGTGTCTGGTGATATTTGCACTGTGCTTCACTCCTCTGAACGTGATACGAACTGTGGCTGTCATATTAAAGAAGTACTTTCCAGAACAATGCAGTCTTCTCCTGCAGGTGGAGACTGCATACTATATCTCCTGGATTTTGGCTGGAGCAAACTGCTGCCTGGACCCATTGCTTTATTGTTTTGGATCACACAACTTTGTCAAGGCTATTCATAGGTCTCTCAGAAAATTTGATGTCAAGTTTAAAAAAGACCCGGCCACAAATGACCAGATCATCTATGATACTGCTATTGATTCTCCCTCCATTGACTTAGAAGACATCCACACCCAGCATTCGAACACATCTTGAATAAGGAACCTCATAGTAGTATAATCACATTGGCTTATTGTGTTTGCTCAGTGCCTTTTTCTTTTTT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551154 lncRNA downstream 191923 21518135 ~ 21546445 (-) True G484929
TU551104 lncRNA downstream 197949 21421212 ~ 21540419 (-) True G484888
TU551127 lncRNA downstream 284229 21451333 ~ 21454139 (-) True G484904
TU551077 lncRNA downstream 351191 21386796 ~ 21387177 (-) True G484863
TU551076 lncRNA downstream 353907 21384189 ~ 21384461 (-) True G484862
TU551558 lncRNA upstream 36613 21776944 ~ 21778023 (-) True LOC110525119
TU551578 lncRNA upstream 68090 21808421 ~ 21808697 (-) True G485307
TU551542 lncRNA upstream 87269 21827600 ~ 21828319 (-) True G485275
TU551549 lncRNA upstream 88346 21828677 ~ 21829570 (-) False G485278
TU551548 lncRNA upstream 88715 21829046 ~ 21829752 (-) True G485278
NM_001165145.2 mRNA downstream 763 21735689 ~ 21737605 (-) True p2ry2
XM_021605607.2 mRNA downstream 5844 21718415 ~ 21732524 (-) True LOC110525475
XM_021605605.2 mRNA downstream 36619 21691111 ~ 21701749 (-) False ehmt1a
XM_021605606.2 mRNA downstream 36619 21691111 ~ 21701749 (-) True ehmt1a
XM_036979605.1 mRNA downstream 49227 21499304 ~ 21689141 (-) True cacna1ba
XM_021605610.2 mRNA upstream 5145 21745476 ~ 21764114 (-) False LOC110525478
XM_021605609.2 mRNA upstream 5145 21745476 ~ 21764115 (-) False LOC110525478
XM_036979607.1 mRNA upstream 5145 21745476 ~ 21764123 (-) False LOC110525478
XM_036979608.1 mRNA upstream 11047 21751378 ~ 21764122 (-) True LOC110525478
LOC110525119 mRNA upstream 35270 21775601 ~ 21779162 (-) False LOC110525119
TU551114 other downstream 303649 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 440195 21296580 ~ 21298173 (-) True G484807
TU550627 other downstream 617301 21119976 ~ 21121067 (-) True LOC110525458
TU550546 other downstream 729286 21007016 ~ 21009082 (-) False G484409
TU551550 other upstream 93217 21833548 ~ 21834360 (-) True G485279
TU552186 other upstream 520303 22260634 ~ 22263353 (-) True G485864
TU552199 other upstream 540395 22280726 ~ 22281026 (-) True G485877
TU553165 other upstream 1097322 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 1510955 23251286 ~ 23253361 (-) False G486953

Expression Profile