RNA id: XM_021605609.2


Basic Information

Item Value
RNA id XM_021605609.2
length 2636
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110525478
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21745476 ~ 21764123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTCTGCTTGGGCGAGTAACATGGTCAGTGAGGTGTTCCCTTgtttgtctggaagtagctagcaagcttgcCAACTTTAGCCAGTGAGCTTGGGTGTTTGATTGCCGTTGTGATGTCAGAACTCTCGGATCAACCCTTCTCCTCGGTCAGAGCTTCCAGTGTGCGCTCTAAACTGATAATTTAACAGCGATCCGAATTTACAAACGACCCCAGAGCGGCGCACTCTGACACACTGGAGACAATTTACGAATGCACcctaagtagaccagacccagcttCTATGGGATACACACTCAGTTATGTAGACCGGAACGGGCTTTTTCGGGTGGTAATCTTTATTTATTCATAATCTTTGGTTTGCCAAGAAGAACCAAAGTTGAGAACTTGTAGTCATTAATTCATGAACGTATTGTATTATTAGCCCTGTGTTTATTTGATTAATATAGCTAGTTCTATTGTACACACAAAATGTTTGCGGGCCTGCCTGAGCTTGGGATATCTAATGGCGAGGATCTAAAAGAAACACTGACCAACTGCACAGAGCCTCTGAAAGCCATTGACCAGTTTCAGACAGAAAATGGCATTTTGTTACCAACTCTTCAATCAGCTCTTCCCTTCCTGGACCTTCATGGAACTCCTCGGTTGGAGTTTCACCAGTCTGTCTTTGACGAGCTTCGTGACAAGTTGATGGAGCGAGTCGCTACTATCGCGGAGGGCAAGGATGAGGACCGTTATGGTAAACTTAAAGAGCTGCTGGAGAAGAGCTTTCCGCTGGTGAAGATGCCTTCCATTCAGCCAGTGGTCATGCAGGTGCTGAAGCATCTTCCAAAGGTACCAGAGAAAAAGCTGAAGCTTGTGATGGCTGATAAGGAACTGTATAAGGTCTGTGCTGTTGAGGTGAAGAGGCAGATCTGGCAGGAAAACCAGGCTCTCTTCGGAGATGAGGTCTCGCCCTTGCTCAAGCAGTATATCGTGGCAAAGGAGGCAGCACTTTTCAGCAGCGATCTCTCTATTCTGCACAACTTCTTCAGCCCCTCCCCTAAAGCAAGACGCCAAGGAGAGGTAGTCTTGAAACTGACCCAGATGATTGGGAAGAATGTGAAACTATATGACATGGTGCTCCAGTTTTTGCGAACACTTTTCCTGCGTACTCGTAATGTCCACTACTGCACCTTGCGTGCAGAGTTGCTCATGTCCCTCCATGACCTGGACATCAGTGAGATCTGCTCAGTAGACTCCTGCCACAAGTTCACCTGGTGCTTAGATGCCTGTATCCGTGAGAAGTTTGTGGATGCCAAGCGAGCCCGGGAGTTGCAAGGTTTTCTGGATGGAGTGAAGAAAGGACAGGAGAAAGTACTTGGGGACCTGTCCATGATACTGTGTGACCCATTTTCCAGTAACACCCTGGTTTTGAGTACGGTCCGAAACCTGCAAGAATTGCTAAGCCAGGATGCTCTACCCAGAGACAGTCCAGACCTGATGCTGTTACTCAGAATGCTGTCTCTTGGACAAGGTGCTTGGGATATGATTGACAGCCAGGTCTTTAAAGAGCCTCGATTGGAACTGGAAGTTGTGACCCGTTTTCTCCCAGCCATGTTGTCAGTACTTGTGGACGACTATACCTTCACTGTAGAGCAGAAACTCCCTAGTGAGGAGAAGACCTCCCTCTCCTACCCTACAGCCCTGCCTGATAACTTCAACAAGTACCTGCAGGAGAACAGGGTGGCTTGTGAGATGGGTCTGTACTACGCACTCCACATTGCCAAGCAGAGGAACAAGAATGCCTTACAAAGGTTACTTCCCGCATTGGTGGAGACCTACAATGACATGGCCTTTGGGGACATCTTCCTGCACCTCCTGACAGCACACCTCACCTTGCTCTCTGATGAGTTTGGGACTGAAGAGTTCTGCTCTGCTGTGTTTGATGGCTTCCTCCTCAACTCTTTCTCCAGTAAAGACAATGTCCACAGACACAACCTACGCCTGTTGCTTCACCTTCACCAGAAAGTGCTGCCATCTTGTGTGGAGACCTTAGTGAAAACCCTGGAACCCTCAAAACAGAGCAGTGACCAGGTAAAGGAGCTGTACACCAAGCTGACCGAGAAACTGGAGGCCCAAAAGAAAAGTCCTCCCCAGCCAGACGAAGCCCCCTCCCTGGACCTGGGGCTCCATCCTGTTAAAGTGCCCACTACAGCTTCCACTCCAACAACATCGCTctgagagaggaggtgggagggagcAGCAAAATAAGGACACCAATTAGTCTGAAAAAAGGATGCTGATATTACATGTTGAATTTAGGTTGGCTCATGAAACCACAAAAAAAACGACTAAATGTAATTTCCTCTGAGTACTATGGTTAAGATTTAGTTTGTTTTCTAATACTTGTTTTATTAAGATGTCGTATTTGAAGCAGTTTTCCAGCTTTAACAATGTAACTCAGTTGCCAATGTTTTTCAGTGTGAATTATTACTTTTTAATTTTAGAAATACGTAGTCTTGCTTAATTATTGTTGTAAGTATATTTTCTTATGTACTGGATCTATAAAGACTGAAtgtcaatgtgtgtgtatgtactgttgTTTGTATTGTGTCAGTGGTGACGCAAgctttaaataaatacatttagaaGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551154 lncRNA downstream 199031 21518135 ~ 21546445 (-) True G484929
TU551104 lncRNA downstream 205057 21421212 ~ 21540419 (-) True G484888
TU551127 lncRNA downstream 291337 21451333 ~ 21454139 (-) True G484904
TU551077 lncRNA downstream 358299 21386796 ~ 21387177 (-) True G484863
TU551076 lncRNA downstream 361015 21384189 ~ 21384461 (-) True G484862
TU551558 lncRNA upstream 12829 21776944 ~ 21778023 (-) True LOC110525119
TU551578 lncRNA upstream 44306 21808421 ~ 21808697 (-) True G485307
TU551542 lncRNA upstream 63485 21827600 ~ 21828319 (-) True G485275
TU551549 lncRNA upstream 64562 21828677 ~ 21829570 (-) False G485278
TU551548 lncRNA upstream 64931 21829046 ~ 21829752 (-) True G485278
XM_021605608.2 mRNA downstream 5145 21738368 ~ 21740331 (-) True LOC110525477
NM_001165145.2 mRNA downstream 7871 21735689 ~ 21737605 (-) True p2ry2
XM_021605607.2 mRNA downstream 12952 21718415 ~ 21732524 (-) True LOC110525475
XM_021605605.2 mRNA downstream 43727 21691111 ~ 21701749 (-) False ehmt1a
LOC110525119 mRNA upstream 11486 21775601 ~ 21779162 (-) False LOC110525119
XM_021605618.2 mRNA upstream 127955 21892070 ~ 21894808 (-) True tubb2b
XM_021605623.2 mRNA upstream 451700 22215815 ~ 22231402 (-) True nr5a1a
XM_021605625.2 mRNA upstream 500508 22264623 ~ 22378999 (-) False nr6a1a
XM_021605626.2 mRNA upstream 674771 22438886 ~ 22441136 (-) True LOC110525492
TU551114 other downstream 310757 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 447303 21296580 ~ 21298173 (-) True G484807
TU550627 other downstream 624409 21119976 ~ 21121067 (-) True LOC110525458
TU550546 other downstream 736394 21007016 ~ 21009082 (-) False G484409
TU551550 other upstream 69433 21833548 ~ 21834360 (-) True G485279
TU552186 other upstream 496519 22260634 ~ 22263353 (-) True G485864
TU552199 other upstream 516611 22280726 ~ 22281026 (-) True G485877
TU553165 other upstream 1073538 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 1487171 23251286 ~ 23253361 (-) False G486953

Expression Profile