RNA id: XM_021605623.2


Basic Information

Item Value
RNA id XM_021605623.2
length 2217
RNA type mRNA
GC content 0.50
exon number 7
gene id nr5a1a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22215815 ~ 22231402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAACGCTGGAAATGACTGCAGTTATTCGTGGAGATCACCATTATCCTGAattatttgtttattaggctacgaATTTGTATTGCAGATTCGGATTGTATGTGACATACAAAGTGGTCAAAGTTTTGCAGCATCTTCTTTAATAGGTTTTATTGTCGTCGACGTCTAGCCTGCCTTATAGGTAATACCATGTTAGGAGAAAAGGCACAAGGCGTTCCATTGATGGTAGGCGTAATGGACTACAACTATGATGAAGATTTGGAAGAATTGTGTCCTGTTTGTGGAGATAAGGTCTCAGGATACCACTATGGACTCCTTACATGTGAAAGTTGTAAGGGCTTCTTCAAGAGGACAGTCCAAAACAAGAAGAGGTATACTTGTGCAGAAAACCAGGAGTGTAAAATAGACAAAACACAGCGGAAGAGATGTCCCTGCTGCCGATTCCAGAAATGCCTCGATGTTGGCATGAGATTAGAAGCTGTGCGTGCAGACCGCATGCGTGGGGGCAGGAATAAGTTTGGCCCCATGTACAAGCGGGACAGAGCCATGAAGCAGCAGAAGAAGGCTTTGATACGTTCCACGGGCTTCAAGCTGGAGTCTGCTCCTCCACAGCTCTCCCCTGTACAGACTAACTATGGCTTCACTGGAACCCTGCACAGCCTCCCATCCCTCCCCAAAGGCCTCATGCCCTCCATCCCAGCCTCCATCACCCCCACAGACTATGAGGCCAGCCTCTACGGACCCTCCTCCCTGGGGGTGGCCATGCAGCCCCATGGACCCCTGCCTACCCAGTACCTGTGCACAGCATTCCCCAGCAGGGCCATCAAGTCTGAGTACTCTGACCACCACACAAGCtccccagagtctctggtggggTACCCCTTTCCGGATGTGTACCCCTCCGGAGGCTCCCCACagcctccccccctctcccccctggtGCTAGAGCTGCTGCGCTGCGACCCAGACGAGATGCAGGTGCAGAGTAAGATCATGGCCTTCCTGCAGCAGGAGCAGAGTGGCCGGGGCCGGCAGGACAGGCTCAGCACCTTCAGCCTCATGTGTCGCATGGCTGACCAGACTCTGTTCTCCATAGTGGAGTGGGCCAGGAGCTGCATCTTCTTCAAGGAGCTCAAGGTGGGGGACCAGATGAAGCTTCTTCACAACTGCTGGTCTGAGCTGCTGGTCCTGGACCATGTCTTCAGACAAGTGCAGCACGGGAAGGAGAGCAGCCtgctgctggttactggccagGAGaTGGATCTGTCATCCGTGGGGTCACAGGCTGGCTTGAGTCTGTCAGGCCTGGTCCAGAGAGGACAGGAGCTGGCTGGGAGGCTACTAGCCCTGCAggtggacaggagagaggttGCCTGCCTcaagttcctcctcctcttcaatcCCAATGTGAAGCTGTTGGAGAACCAGGTGTTTGTGGAGAGTGTTCAGGAGCAGGTGAATGGGGCTCTGCTGGAGTACACTGTGTGCACCTACCCCCTGTATCTGGACAAGTTCAGCCAGCTGGTGCTGCATCTGCCAGAGCTGCGAGCCCTCAGCACCCAGGCAGAGGACTACCTGTGCTACAAACACCTGAGTGGGGAGGTGCCCTGCAACAACCTGCTCATTGAGATGCTGCATGCCAAGAAGGCCTGTATATGAGCACCACGCTACCATCACTGTACACCAGCAGACTGTCTGTGGGACCGATGGTGTGGAAGCAAAGAGGGGATTTATGATTACAGCTAGGAGAAGAtgagttgtgtgtttgtgtgtgtgcgtccgtgcatGCGTGAGTATCCCCTCTGTCCAAGGTGTGTGTAAACAGAATATTGACTCATTGTTTTGGCAGTCCTTCTATTGTACATAGTTATAAAATGTACAAAGAAAGCTATGCtatgatactgtatgtagtaaatGTAACATTTTGTTGAATTCAGCAGAGTGAGGTCTTATGTCAACGTTATATCAGAGTTATAGGGCCACTTTCAGATGAAAGAGGCCCTATAACACGTCATTAAGACATGTCTTAGCCTTTCAAATATAGTGGAAGCACTACATTTATTTTAGCACTTGTTCCTTTGTACATTGTCACCAACTTTACCAAAAAATGTGGTATGTGAAAAATATGTTATGTTCAATATAGTTTTTTTCTATTAGATATTGATATTCTAATATATGAACTACACATATGTTTCAAGAATTAAATCTGCATACTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08705 NR5A3, ftz-f1; nuclear receptor subfamily 5 group A member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551950 lncRNA downstream 20927 22194582 ~ 22194888 (-) True G485651
TU551944 lncRNA downstream 28088 22187420 ~ 22187727 (-) True G485645
TU551942 lncRNA downstream 30750 22184833 ~ 22185065 (-) True G485643
TU551927 lncRNA downstream 49726 22165773 ~ 22166089 (-) True G485628
TU551881 lncRNA downstream 58197 22157374 ~ 22157618 (-) True G485587
TU551998 lncRNA upstream 9797 22241199 ~ 22241401 (-) True G485690
TU552008 lncRNA upstream 17002 22248404 ~ 22248725 (-) True G485700
TU552190 lncRNA upstream 32038 22263440 ~ 22263661 (-) True G485868
TU552189 lncRNA upstream 33324 22264726 ~ 22265228 (-) True nr6a1a
TU552197 lncRNA upstream 46974 22278376 ~ 22278642 (-) True G485875
XM_021605618.2 mRNA downstream 321007 21892070 ~ 21894808 (-) True tubb2b
LOC110525119 mRNA downstream 436653 21775601 ~ 21779162 (-) False LOC110525119
XM_036979607.1 mRNA downstream 451692 21745476 ~ 21764123 (-) False LOC110525478
XM_036979608.1 mRNA downstream 451693 21751378 ~ 21764122 (-) True LOC110525478
XM_021605609.2 mRNA downstream 451700 21745476 ~ 21764115 (-) False LOC110525478
XM_021605625.2 mRNA upstream 33221 22264623 ~ 22378999 (-) False nr6a1a
XM_021605626.2 mRNA upstream 207484 22438886 ~ 22441136 (-) True LOC110525492
XM_021605627.2 mRNA upstream 209842 22441244 ~ 22457748 (-) False LOC110525493
XM_021605629.2 mRNA upstream 209842 22441244 ~ 22457748 (-) False LOC110525493
XM_021605630.2 mRNA upstream 209842 22441244 ~ 22457748 (-) False LOC110525493
TU551550 other downstream 381455 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 781096 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 917642 21296580 ~ 21298173 (-) True G484807
TU550627 other downstream 1094748 21119976 ~ 21121067 (-) True LOC110525458
TU550547 other downstream 1206733 21007016 ~ 21009082 (-) True G484409
TU552186 other upstream 29232 22260634 ~ 22263353 (-) True G485864
TU552199 other upstream 49324 22280726 ~ 22281026 (-) True G485877
TU553165 other upstream 606251 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 1019884 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 1154132 23385534 ~ 23385907 (-) True G487022

Expression Profile