RNA id: XM_021605625.2


Basic Information

Item Value
RNA id XM_021605625.2
length 4245
RNA type mRNA
GC content 0.46
exon number 11
gene id nr6a1a
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22264623 ~ 22378999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATCTTATTGCCTACTCATTGCCAACTCAGCGGAATGATGCAGAACCACCAACTACAAACACGACGACCAAACCCTACATAACCCAGAATGCATACTGCAGCGCGTACGTCATTGCTTAATGTTCAGGGTAAATGATTTGTGTAGGTATGGGGGTGTGGAAGAACTGTTATTCTTACTGACAACTGCAGGCTTGGGGCTACAGTCTGTCCAGTGAAGACAGTAGCCTCTCAACACAACGAAGACAGCTAATTGCATTATCGAATTGAAAATATTGCTAATAGGCGCCCGGCTGATAGAACGGCGCGCATGCAGCTTTCATGAAGGAGGATGGAGATAGACGACAGGACGAATGGGTTCGATTACCCAGAGAGAAACAATACGAAGTCCGTTAACGGCTTCTATGGTGACCATCCCTTGGAAGTTGAACAGAATGATGTCGTAGATGAAATGAATGGCAGTAATCTTGATGATGCAGCTGACCCACGTGTTTGCCTCATCTGTGGAGACCGCGCCACAGGCCTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGCTTCTTCAAGCGTAGCATCTGCAACAAGCGCGTGTACCGATGCAGCCGAGACAAAAACTGCGAAATGTCGCGCAAGCAACGCAACCGCTGCCAATACTGCCGTCTGCTCAAGTGTCTACAGATGGGAATGAACCGCAAAGCAATCAGGGAAGATGGGATGCCAGGAGGGAGAAACAAAAGTATCGGGCCTGTCCAGatcACAGATGAAGAGATTGAGCGGATCATGTCGGGACAGGAGTTCAAGGAGGAAGCCAGTCTGCCGGAGCACACCTGGAGCAACAACGGTGACAGTAGTGACCACAGTTCTCCTAGCAACGGCGCCTCCGAGGGCAACCAGCCATCACCTGCTTCCACTCTATCATCCAATCGTTCTTTAGAGATGGGTGGTGGCTACACGGGTGCTGTCAGGGACCAGTACATCAACGCCCCCATGAACACCCCCTACCAGCTGCTACCTCACCTCTTTAGCTACGCTGCCCAGTCAGGCCTGTTGGCCCCCCAGCCCCGCAGCCTCTACCCCCAGTCACACCCCCTGGTGATGCAGCTTGTGGCTGCAGAGGACCTAACTCCACTGGCCACCCCCATGCTGATAGAGGACGGGTATAAGGTGACTCAGGTGGAGTTGTTTGCGCTGCTGTGTCGCCTGGCCGACGAGCTGCTGTTTCGTCAGATCTCGTGGATCAAGAAGCTGCCGTTCTTCTGTGAGCTGTCTATTGAGGACTACACCTGTTTACTCAGCTCCACCTGGCAGGAGCTGATCCTGCTGTCCTGCCTCACCATCTACAGTGCACAGATCTTTGGAGACCTGGCCGACGTCACCGCCAAGTACACTCCCTCTGATGAGGAGCTGCAGGGGTTCAGTGAGGATAGCATGGAGTTGATGGAGAGGCTGATCTATCTGTTCCGCAAGTTCCACCAGTTGAAGGTCAGCAACGAGGAGTACGCCTGCATGAAAGCCATCAACTTCTTGaaccaagATATCCGCGGTCTGACTAACGTCTCCCAGTTGGAGCAACTGAACAAGCGCTACTGGTACGTGTGTCAGGACTACACCGAGTACAAGTACCCTCACCAGCCCAAACGCTTCCCTGAGATCATGATGTGTCTGCCAGAGATCCGTTTCATGGCAGGGAAGCTGGTGAACGTTCCTCTGGAACAGCTCCCCCTCTTGTTTAAAGCAGTTTTGCACTCCTGCAAATCCAGCTTCATCAGCAACAGGACAGGAAATTCTCCCTGTATGACTACTACTGGTACCTCCCCCGGGAACTGAGCCCCGCACCCTGGCCCCAGGACCGCCCTTTGACAAGAATCTTGCCTGGGGTGGGGCCAGGGACTGGTCCCCCTTCCTGTGAATGTGACAAGCAATTTTTGTtctctatatatttattacaCGACAGAGCTGAATGTATGCTGATTTACGCTGTGCACATGCTTCTGTACAAACTAAATGCACATAGATGCATTGGTCTTTGGAGTTTACAAATATGTATCCGATTGCTCAACGTGTCAGTGTTGCCATTGTTAGAACTAGATTTTTAAGATTTATTTGATTCGGAATGGGGACGGGTATAAATGAGTTGACAAGTGTTTTGAGACTACCTCAGGAAGATGATGTTGCTATTTTCAGGTACCTTTTTCTCGCTGTTTTGAAATGAAGAGGTTGCCCGGTCTAAATCAAATCCCTGTAAATGCTGTAAACTCCTGAATCATAGATGATAAGTCGGCCTTTACAATGACATTGACCAAAGGCATTGCTGCATATTCATTTGAACCAAAGATAGAAAAGCATTCAACCCTGCAATCAACAAATGAATGTCCTGAATTTCCCACTAGTTCTGGTGTATTTTCTCACTTCTTGTAGTATTTTTGTACACTATTTCATACAATCCACAAACAGACATCCTGTAGGGATGGCCTGGTCAATGTAACATTCCTTGTCTTTCAGTGAGGTGAAATTTTGTTGGATTGTGGGATCTTCATAGAAAACAAGCATACGGGTATTTTCTACAATCATAGACTGCAGAGCAAATTTAGTTGCATAGTTGCAGGGGTAGGGGAAATTTGTTATTAGCTTGAATGAGAATTGTTTTTGACCAAAGTGATATGCAAAGTTTTTTAAGCAGCACCCATAGATTAGTGATTAGTCGATAGCTCAGTGTAATGATTTCTTATCAATGAAGGACCAGGATAAGAAATGAATCAATCTGTTTAAGAGCCAGAGGGGAgaccctcagacagacagtgtagctCGTTCTTATCCTAACCCCTAGGCTGAGACACCACAAACAAGGGctccactctcttctctcctaGTCCCTGCTCCTCCAGACATACAACCCATCTTGGCTTTCCACTGGTACTTCCTTGCCCAAACCTGAGCCTCTGCACATGCTCACTGGGTTGGTGGTCCGATCTGCACAGTTAGGCTACAAGGAAATGCTGGCTTGTTCATTTGTACTACTACATTTGTAGACAGTGTTGGGTTTAGAATGCTCAGGTGACTATATTTTGACTGcaacagaggagagatggaggagacattAGAGGCATGTCTATTAATCTGGTCTGTGTTGACAGACTAGAGGTTACTTCTGGCTTGCACACATTGTTTAAAAAAGCTATATAAAGAAATAGGTTCTTTATTTATGAAGTATGAGATGATCATTTCAACCAGCCGTTAGCCGTTTCATAACAACCATTGTTTAAAATGTGGAGCAATGCAGTCCTTGCAACGACTCTTTTCTGCATGCCGTGGTGAGGCAGGAGACATTCTTTGACCATTACCGTGGCAAAGTGCCCACCCcgcattctcctctctctcaggtccttgtggACCGGAATTGAAACAGGGTAAAGTGAGTGTTATGTATTGCATTCATGAGTTACTCAGTGATCACTATGCTGATGTacttgtaggatttttaattgtAGAATTCTGGACATTGTAGGTCCTTTTAGAAAGTGtttcatatttcatttttttctgttCTGTGAAAGTGGCTGTTGTTTACGGGCATGTTTTAGCTTATTTGTCTGAAGATGGTCGGAGACAGGACTTAACATCAGTAAGGTCAGAGAGGTCCCTTTTCCACTCTGAGCCTAACCAAGCTAACCTCAAATCAACAGGTGGGCTTACGATTGCTGCCTCCATCACTGGGTCTAGACTAGCCTGTCTATATCTTCTTAGCCTTAACACGGTACTACACTGTACCGTCTAATGTCCTGAACCACGCTTTGAATACTTTCACCAATACAGTGTTCTTTGTTTCAGTAGTTTCAATTAGCCACCTTTCCATGTTTTGTTGTCATACATTtcatgtattttgtttttttggaGTGAAAAAGACCCctatcatttgttttatttttaatgatTTCGGATGGATGTTGGATGTGATTCTATCAACGTGATGCCACAGTTCCAAAGGAAATAATGTTTATGGTATTGATGTTACAATTCTAAAGTGTTTACAAACTATTACCAAAAACACTGATTTGATGAATAGAATGATATATGCAGAGAGTGAATTAACCAATGGCAGGCCCCTGTGAAACCggtaaatatacagtgcattcggaaagtattcagacatcttgactttttcaaaatgttgttactttacagccttattctaaaatggattcaattgtttttttactcatcaaactacacacaataccccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552190 lncRNA downstream 962 22263440 ~ 22263661 (-) True G485868
TU552008 lncRNA downstream 15898 22248404 ~ 22248725 (-) True G485700
TU551998 lncRNA downstream 23222 22241199 ~ 22241401 (-) True G485690
TU551950 lncRNA downstream 69735 22194582 ~ 22194888 (-) True G485651
TU551944 lncRNA downstream 76896 22187420 ~ 22187727 (-) True G485645
TU552282 lncRNA upstream 27936 22406935 ~ 22407266 (-) True G485959
TU552298 lncRNA upstream 45227 22424226 ~ 22427128 (-) False G485969
TU552300 lncRNA upstream 45227 22424226 ~ 22427128 (-) True G485969
TU552358 lncRNA upstream 135438 22514437 ~ 22514684 (-) True G486024
TU552379 lncRNA upstream 149486 22528485 ~ 22529833 (-) True G486037
XM_021605623.2 mRNA downstream 33221 22215815 ~ 22231402 (-) True nr5a1a
XM_021605618.2 mRNA downstream 369815 21892070 ~ 21894808 (-) True tubb2b
LOC110525119 mRNA downstream 485461 21775601 ~ 21779162 (-) False LOC110525119
XM_036979607.1 mRNA downstream 500500 21745476 ~ 21764123 (-) False LOC110525478
XM_036979608.1 mRNA downstream 500501 21751378 ~ 21764122 (-) True LOC110525478
XM_021605626.2 mRNA upstream 59887 22438886 ~ 22441136 (-) True LOC110525492
XM_021605627.2 mRNA upstream 62245 22441244 ~ 22457748 (-) False LOC110525493
XM_021605629.2 mRNA upstream 62245 22441244 ~ 22457748 (-) False LOC110525493
XM_021605630.2 mRNA upstream 62245 22441244 ~ 22457748 (-) False LOC110525493
XR_005052036.1 mRNA upstream 62245 22441244 ~ 22457748 (-) True LOC110525493
TU552186 other downstream 1270 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 430263 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 829904 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 966450 21296580 ~ 21298173 (-) True G484807
TU550627 other downstream 1143556 21119976 ~ 21121067 (-) True LOC110525458
TU553165 other upstream 458654 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 872287 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 1006535 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 1011018 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 1204037 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile