RNA id: XR_005052036.1


Basic Information

Item Value
RNA id XR_005052036.1
length 6154
RNA type mRNA
GC content 0.47
exon number 24
gene id LOC110525493
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22441244 ~ 22457748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcaccaccaccaccaccaccaccaccccccctcATCGGATATGTCAAATGAACATGGACCCATATGAAACGTCAGCACAGTGAGTGTAGGAGCAGTTTACGTATTGATGTTAGCGAGCTAGCCTAGTAAAATACAGTCCAGACATAGAAATACATTTGTCGTAAAGCAGTATATTTGTAGAGTTATTACATTGGGAAACGGTAGAGTTTATATTCGTTGCAGAGAATACGTTTAACGCAATGGACTTCACTTGGATTTTTTTACTTTCTCGAAGTTCATACGATTGAAAGAGGAATGACAATGACAGTTCCCTTGCCTGTGAGAGGAGGCTACACTGGAATACAGCTGTTCTGTGACCAAAACAAGGGACCTTGAAGGACCACAGCCTGTGTGACAGAGGACTTGCATTGTGAAGCTTTTGGGGAGAGTAGCAGGCAGTACACTTGTGTAAAGAAACACTAAGGCAAGGTGGAGATGTTTGCCAAACTGAAAAAGAAGATTGCTGAGGAGGCAGCCACAGCCCCCCGGACCGGAGTCCGCATGCCTCGGTCCTATAGCAAAGAGTCCATTACGTCAGTGGGGGCAGACTCGGGGGATGATTTTGCCTCTGATGGCAGTAGCTCCAGGGACGACCTCTCCTCCCAGATCCTCAGAAGGAATGATCAGATTCGCAAGCTGGAGGCCAAACTATCAGACTACGCTGAGCAGCTCCGACTTATGCAGAAGACCAAGGACAAGCTTGAAATTGCATTAGAAAAACATCAGGATTCCTCCATGAGGAAACTGCAGGACCAGAATGAGACTCACCAGGCCAATAGAGCCAAAATGGCCGAAGGCATGGCTTTGGCACTGGACAAGAAGGATCAGGAATGGATGGAAAGGATATCTACCCTGGAGCAGGAGAAAGCGTCTCTGTCTGTGAGGCTAGATGAGATGATGGAGCAGAGCCTTACTCTGTTCCAGAAGAGGGATGACCTGGACGAGCTGGAGGGCTTCCAGCAGCAGGAGCTCGCCAAAGTCAAACACATGTTACTGAGTAAGGAGGAGCAGCTGGTCCAGCAGGAGCGAGTGCTCCAGCAGAAGGGTGCCGAGCTGCAGATGGCCAAGAAGGGTCTGGCCGAAGCCCAGGAGCAGCTGCGGGTTCTGGGAGAGGAGCATCAGGAAAGTTGCAGGCTCAACACGGAGCAGGAGATGGAGAGAGAGGAGCTGCTGGAGGTCAGGGAGCAGGCTGAGAAGAAGATTACTGAGCTGGAGGGCAGAGGCCAGAACCTGCAGAAGGTCATCCAACAGGTATCTGAAGACTTCCAGAAGTCGCGGAGCGCGGCAGCAGCTGTAGAGAAGTCTCTCCGTACGTTACAAATGGAGAACAATGCCCTGAAGCTGCAACAACACAAAGCTGCAGTGACTGATGAGGACAAGGAGCGTGTGCTGCTGGACCTGCAGGAGAAGATCTCCTCTCTGGAGAGACGTCTGCATGGTAACCTGAGTGAAGACGAGCTCCTCCAGGAGCTTCTCAAAGAGAAGTCCACTCTGGAGCAGAGGCTGGAGGACACGAGAGTTGAGCTGCTGGAGGCACGCACCAACCATGCAGACACGGTTAGCTCTTTGGAGACTCAGATATCCAGACTCAACAACAATGTGACTGAACTACAGACCCTGCTACGACACAAGGACGACTCTTCCAAGAACTACAGAGAGAGAACGGACGCACAGaTAGCAGGTCTGGAACagcaggtgcaggagagcaaTGAGAGGCTCAAGAACACTGAGCAGCAGATCTCTGACAAACAAGCACATCTAGACAAACTGCAGGCAGAGTGGAGTGTGGAGAGGGACAGTCTGCAGCAGCAGGTGTCTGCAGAGCGGCAACAGGGCCAGGAGAGGGCAGGTCGGCTGGAGGAGCAGCTCACTgcactgcagacagagagagacaccgaaCACACCTCTGCCCAAGCCAGGATTAGTGAGTTGGAGCAAGACAGAACGTCTCTGCTGAGGGGGAGGGATAAAGCTGACGTTGCTCTGAGGAGGCAGGCAGAGGGGCTGGAGCAGGCCAGGTCAGAGCTGAGCAGCAGGCAGACTGTGAGTGTGGAGATAGCCATGGCTCTGGAGGACACCAGGAGACAGAAGGAGGTGCTCCAACTACAGGTAGGAGAGATGATGGCGTCACTTCAAACAACATCGCAGGAACTGGCCCACGTCACTGAGCAGCTGAAGCGGAAAGAAGAGGAACTCCAAACACTTCGCAATGAGCTGCAGAGTGCCCAGAGCTCCCTGTCCCAGCTgcaagaggagacagaggggctgCAGGCAGCAGCccaggagaggcaggaggagaagGACAGCCAGCTGGTCAGCTTGAGGCAGGAGCTCCTAACCCAGAATGAGCAGTTGGACTCCTGCCAGTTACGGGTATCGGAGCTAGAGGTAGAGACTCTGACGTTGCAGCAGACTCCAGAGCTGTGTGAACTGGACCAGAATGGGACTGTGACGGTGGATGACCTGGACCACATGCAGAAGGCCAACCGAGACCTGGAGCAGCAGCTCAGTGACAAGAACAAAACCATTAAGCAGCTGCAGCAGAGACTAGCAGAGCTAAAGAGGACCTTGCAGAAGGAGCTGAAGCTGAAACCTGAAACAGAGTCCGATGGGAAAGAGAGGGCccaagaagggagaggagagagGCCTATCAGCTGATCAGAGCAGTGTCTGTGTTGCTGAACTTCACTGGTGAGGAAGAAGACATGTTGAAGCAGACTCTGGAGTACAAGATGTCCTGGTTTGGATCCAAGCCTTCTCTGAAAGGTATTGTCCGGCCATCAGTTTCAGGGGCACCTGCTCACTGGAGCTGAGGAGaccgagagaggaagaggggacagGCGCACACATTACTTTTATCATGCGTTTGCATGACTTCTCCCACCACTGTGGCAACCAAATGAACACTGTAAAGAGAACACAACCCAAGCTTTAAAATGGTTTCTGACATGACACAGATTCCTATGTACTGTAGCTCCTCAATCTCTCCtgcaattttttttcttcttcatcttCAAGAGAAAAGAGTGGCTCTACAATGACTTAGAAGGGCAAAGTCTTGTTAATgtggtctgtttttttttttttggggggggggggggggggtgatttttATTTAGAAGTAAAATGGTTAAAGCAGACATGGTGTTGACCCATTTGATAAATGTTAACCTTAAGAGaaaccctcctccctccccttggAATGAGGTTAACATTAGATCTAGCTCTGTCATGGACACAGTACaagtacactacattaccaaaagtatgtggacatctgcttgtctaacatctcattccaaattcatgggcattaatatggagttggtcccccctttgctgctataacagcctctactcttctgggaaggctttccactagacgttggaacattgACACCGGGGACTTGCTTACATTCAGCTGAAATAGCATTAGTgaagtcaggcactgatgttgggggattaggcctggctcgcagtcagcgttccaattcatacaaaaggtgttcgatggggttgagatcagggctctgtgcaggccagtcaagttcttccacaccgatctcaacaaaaaATGTCTGTATAGACCTCATCTTGGGCATGtggccattgtcatgctggaacaggaaagggccttttccaaattgttgccacaaagttgaaagcacagaatcgtctagaatgtaattgtatgctgtagcattaagatatcccttcactggaactaaggggcttagcccgaaccatgaaaaacagccccagaccattattcctccttcaccaaacttacagttggcactatgcatcaaggcaggtagtgttctcctggcatctgccaaacccagattggtccgtcggactgccaggtggtgaagcGTAATTCACTATAGCATTTCTACTagtccagagtccaatggcggcaagctttacaccactccaaccaaagcttggcattgcgcatagtgatcttaggcttgagCGTGTGGCTGCTCGGTCGTGggaactcatttcatgaagcttccaacGAACAgtttattgtgctgacgttgattccagaagcagtttggaacttggtagtgagtgatgCAACCCGAGGACAAACGAGTGCTGACGTTgattccagaagcagtttggaacttggtagtgagtgatgCAACCTGAGGACAAACGAGTTTACACGccatgcgcttcagcactcggtggtcctcttctgtgagtttgtgtggctcAATGTACTCAATTTGATACacatgtcagcaacgggtgtggctgaaatagccgaatccactcatttgtaggggtgtcctcatacttttgtgtatatatggtgtatgTCTTATTCTCCAGGTGTTAAGAGTGGGATGGGTCAGGCCTACCAGACTGTCACAACTCTTTTTGACAGAGAAGATTATGTCTCTGTGCTccaatgttttttctttaatttagacataGAAAACGGTATTTACTGCCGATGACTACCTATGGCAGGGTTCCCCAAATAGGGGTCCAAGGGCCGAATTTGGCCTGcgtgtggttttatttggccccaaatgttttctgagcaaaaatgctattttttatatatttttttgtattgttgGACATAAGGCTGTAAAAACGTCAGGAAATCAGTTCCAAGCTATTTTAATTTTGGACATCTGTTCCCAAATATCTTCCTGAAATGATTGTTTTAATCTAAAATTCTTTCTGTTTGGGATTCTTGGGGTCAATTTGAAGTCTACaaatatttgtaattatgttccagccaTCCAAAAAAATGAGCCTGCAGCTAGATCCAGTTGATGATCCCTTCTCTATGGTTGGGAAAGAGATATTGTGGAATTGTGAGTGCATGATAACAAGAACCTTGAAAATTCTACCATCCCAATCAACCCCTCTTCAGTTGAATGGAACGCCCAAAGATTTCTGATGGACCCTTCACAACAGCCTTTAATTTGGTTCTTTCCATTAAAAATATAACTTCAGATGGCTTATGAAGGAATAATCCATGTTAAAATCAGAACTTGTGATGTCTCTGAAGGGGAGGTGAGAGTCATACATCAATGTCTTTGATATCAATGGAGAAAATCTACGTCATGTAGACAGGAGAGGAGTACTTTTTAAATATGTTAAATAATTATTGAAAGCTATCTAAATCAGAATTATCGACGGATGTGCTCTACCTTTACCTGCCTTGTGTTTGTGTAAATGACAGTACATTCCATGTCTATTTATATATGATAACTGTACATATGCATTGAGAACTTTATAAATCACTGGGTGTAAAATAATTTTGTTTAACCTCTTGCAGTATTTTACACCATGTTTTACCTGTCTGTCCATGTAGCCAGTCTTGGCTTGATGTTCTGTCTCACTGTTCATTGACATCCTGTCAGAACTAAGTGACCATTTGTGTGAGCTTACAATGTGAGGGCATTAACAATGTACTGGAGGAAAGACCCTTTAATACAGTATGCATGCCTTATAGCAAAATGCATTGGTTTTCTGCAGAGGGAAAACCTGTCTCCTTACATTCTGAATAGAATGTGAACCATATTAATGGCTAAGATGTGAGGCAGCAACACAGCAGTCTGCACTCTGAATTCTACTCCCATATCATGTGAGGAATATCCATCTGTCTGGTTacattacagtactgtagcattTGATGTCACATTCATTGGGTTTGTGCGGTCAGTCAACTGTGGGGCTGGGAGGTCGAAGAGGAAGGTGACAATGATGCATTGTGTGAACAAGGTCCTCCCCGTCTTTAAACTTCTGTCAAAATGGACACGGTCTACATTCAATGTCAAAACACCACACTGTGTTAAGTGACCTGCTATTGAATAGTATCTGGTACCACAAATTTAGTATAATTCCATAGAACTACAATAATATCACATCACAGGTGGCTATGACTCTACTGCAAGGTCACCATTTTTTCACTTCTGTTTGATTCCGCTATGTGTGGCTAACTGTGGTTTTTAACAAACAATCTAATAAATCACAACAGATTCTATTAATTCTCATTTTAACAAGTGCTACCActacaaattattttattttgttttgtcttcatttcttgttaataaataaatgttaaaaagcATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552298 lncRNA downstream 14116 22424226 ~ 22427128 (-) False G485969
TU552300 lncRNA downstream 14116 22424226 ~ 22427128 (-) True G485969
TU552282 lncRNA downstream 33978 22406935 ~ 22407266 (-) True G485959
TU552257 lncRNA downstream 80688 22360190 ~ 22360556 (-) True G485935
TU552252 lncRNA downstream 86655 22353136 ~ 22354589 (-) True G485930
TU552358 lncRNA upstream 56689 22514437 ~ 22514684 (-) True G486024
TU552379 lncRNA upstream 70737 22528485 ~ 22529833 (-) True G486037
TU553006 lncRNA upstream 82854 22540602 ~ 22540811 (-) True G486573
TU553008 lncRNA upstream 85615 22543363 ~ 22543636 (-) True G486575
TU553019 lncRNA upstream 122252 22580000 ~ 22580206 (-) True G486586
XM_021605626.2 mRNA downstream 108 22438886 ~ 22441136 (-) True LOC110525492
XM_021605625.2 mRNA downstream 62245 22264623 ~ 22378999 (-) False nr6a1a
XM_021605623.2 mRNA downstream 209842 22215815 ~ 22231402 (-) True nr5a1a
XM_021605618.2 mRNA downstream 546436 21892070 ~ 21894808 (-) True tubb2b
LOC110525119 mRNA downstream 662082 21775601 ~ 21779162 (-) False LOC110525119
XM_021605632.2 mRNA upstream 3021 22460769 ~ 22464148 (-) False LOC110525495
XM_021605631.2 mRNA upstream 3021 22460769 ~ 22464361 (-) True LOC110525495
XM_021605650.2 mRNA upstream 92466 22550214 ~ 22572551 (-) False LOC110525498
XM_021605648.2 mRNA upstream 92466 22550214 ~ 22572552 (-) False LOC110525498
XM_021605646.2 mRNA upstream 92466 22550214 ~ 22572554 (-) False LOC110525498
TU552199 other downstream 160218 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 177891 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 606884 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1006525 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1143071 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 379905 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 793538 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 927786 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 932269 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 1125288 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile