RNA id: XM_021605631.2


Basic Information

Item Value
RNA id XM_021605631.2
length 2494
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110525495
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22460769 ~ 22464361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGCAGATGGCAGCACAACGCAAACTGTTCAGTAAATCTGCCTGACGGAACCGAACATGCACAGTAGTAGAAACATTAGCAAACAGCTGATACAATGGCGCCACTGGACCTGGATAAATACGCGGAGATTGCCAAGCAGTGTAAATATTTACCTGAAAACGACCTCAAGAGGTTATGTGATTATGTATGTGACCTATTGCTGGAGGAATCCAATGTCCAGCCTGTGTCCACCCCAGTGACTGTGTGTGGAGATATACATGGACAGTTTTATGATCTGTGTGAACTCTTCAGAACTGGAGGACAGGTCCCAGACACAAACTATATTTTCATGGGTGACTTTGTTGACCGGGGATATTACAGCTTGGAGACATTCACATACCTGCTGGTTTTAAAAGCCAAATGGCCTGACCGCATCACGCTTTTAAGAGGAAACCACGAAAGCAGACAAATAACCCAAGTATATGGCTTTTATGATGAATGCCAAACCAAATATGGAAATGCCAATGCCTGGCGCTACTGTACCAAAGTGTTTGATATGTTAACAGTTGCAGCGCTGATGGATGAGCAGATTCTGTGTGTTCATGGGGGCCTCTCCCCAGACATAAAGACCCTGGACCAAATCAGAACCATTGAGCGTAACCAGGAGATCCCCCACAAGGGAGCATTCTGTGACCTTGTCTGGTCAGACCCCGAGGACGTCGACACCTGGGCCATCAGCCCCAGGGGAGCTGGGTGGCTGTTTGGTGCAAAGGTCACCAATGAGTTTGTTCACATCAACAACTTGACGTTGATCTGTCGGGCACATCAACTAGTCCATGAAGGTTACAAGTTCATGTTTGATGAGAAGCTGGTCACGGTCTGGTCAGCTCCTAACTACTGCTATCGCTGCGGCAACATTGCCTCCATCATGGTCTTCAAAGACGCCAATACGAGGGAGCCCAAGCTGTTTCGGGCGGTGCCCGACTCAGAGAGAGTAATTCCACCCAGAACAACGACACCATATTTCCTGTAAACACTGCACTAACTATCATCATCATCTTTGGCCACACTGTTATCAAGCACCACATTTGTAATGCATCACATACAGTGGAGTGACAACAACTCCCGTTGAAGTGACACCACTGATTATGTCATTCATATtttaccagtggaggctgctgaggggaggacggctcataagaATGGCTGGAATAGAgccaatggaatggtatcaaccacatggaaaccacgtgttttataccattccattgactccattccagccattcttatgagccgttctcccatcagcagcctccactgtattttactgtaggctactgtacgtAACTTATATACAGTACTATTGTTTTTGTGTCTGCTGTAGCTCTGCGTGCCAACACGTGTGTTCACACAGAAGTACTATATCAAGTAGTGCCACTACTCAAACGTTTCAAACGTTTTAGGTGATAGCAGTGTCAATATTTAATGTTTTTATCAAACACGTGTTAGATTTAATGAATCATGGTAGATTACAATAAGAACACGTGAAGTGAAACAGGAACACTTATTTTAGCCACTTTACAGGGAGAGGACACTGTTTCTGTTTGACTTCGGTCTATTTGCAGCCTATTAGGAATATACTGTAGAAGATGTTATTTGTCAGATGttagtttttatttttgtaatgtATATTTATTGAATTTCATGTATCGTgtagatatatatacagtataaagcACTCAAATTAGAAATATGTTTAAATGAGAATTTACTCATGCACTTAACTTAGGTATCTTATTTAGTCTTGTAATAAAGCTATAAGCCTGATAATTGAGGTGAGAAATTATTATAATGAACATCACTGATCTAAAACATATAGATAGGTTCTGTGATGGAAAATTGTATGTTGGTGATTTTCTATTTACCAATTTCTATGTTCTGTGTTTGTGCTTTTCTgttaaccaatttctgtgttcatgcaagtgactgttTGAACGAATCCTCACAATTAGTGTCTGCAATTTGGTAGTACGCCCAGACCCTTGTTTAGAGAAagggatatctcagtttcaaggtctcagcttagagagaagaagcctcgtgaggtattagtctgtcacatgcatgacccagtattggtcagtcacatgaATGAAGTAAACGTTAatgatgaataagctaaatcatgcaacTATGACTTGTCAGTATATAAAGGAACTAATAGGACTGCCCCGTTAGAGCTCCTGACAAACATTCACTATGGTGCATCAActttgttggaacctctccagcgagCTGATAaaaacaatgattcatttaagattgacttcgaccctgtgtaagaatttccacaatAGTTCATATGTCTGTAGATAACCTGATTCAGCAGTAAGGCTAGCTGTGGTTATTTGTGTGAACTGTCTGTGATACAGAGTGAGCTTGTGAGATTGTAGGCTATCAAAATGAGGGATGATGCTATTACTGTAAATCATTAAATACGTGGAAATACAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552298 lncRNA downstream 33641 22424226 ~ 22427128 (-) False G485969
TU552300 lncRNA downstream 33641 22424226 ~ 22427128 (-) True G485969
TU552282 lncRNA downstream 53503 22406935 ~ 22407266 (-) True G485959
TU552257 lncRNA downstream 100213 22360190 ~ 22360556 (-) True G485935
TU552252 lncRNA downstream 106180 22353136 ~ 22354589 (-) True G485930
TU552358 lncRNA upstream 50076 22514437 ~ 22514684 (-) True G486024
TU552379 lncRNA upstream 64124 22528485 ~ 22529833 (-) True G486037
TU553006 lncRNA upstream 76241 22540602 ~ 22540811 (-) True G486573
TU553008 lncRNA upstream 79002 22543363 ~ 22543636 (-) True G486575
TU553019 lncRNA upstream 115639 22580000 ~ 22580206 (-) True G486586
XM_021605627.2 mRNA downstream 3021 22441244 ~ 22457748 (-) False LOC110525493
XM_021605629.2 mRNA downstream 3021 22441244 ~ 22457748 (-) False LOC110525493
XM_021605630.2 mRNA downstream 3021 22441244 ~ 22457748 (-) False LOC110525493
XR_005052036.1 mRNA downstream 3021 22441244 ~ 22457748 (-) True LOC110525493
XM_021605626.2 mRNA downstream 19633 22438886 ~ 22441136 (-) True LOC110525492
XM_021605650.2 mRNA upstream 85853 22550214 ~ 22572551 (-) False LOC110525498
XM_021605648.2 mRNA upstream 85853 22550214 ~ 22572552 (-) False LOC110525498
XM_021605646.2 mRNA upstream 85853 22550214 ~ 22572554 (-) False LOC110525498
XM_021605649.2 mRNA upstream 85853 22550214 ~ 22572554 (-) False LOC110525498
XM_021605645.2 mRNA upstream 85853 22550214 ~ 22572557 (-) False LOC110525498
TU552199 other downstream 179743 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 197416 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 626409 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1026050 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1162596 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 373292 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 786925 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 921173 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 925656 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 1118675 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile