RNA id: XM_021605648.2


Basic Information

Item Value
RNA id XM_021605648.2
length 2564
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110525498
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22550214 ~ 22572561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGATTCCAGGATGATGTGTAAATACCAGGGAGGGACACATTGCTTGACAGTGACAGAACCGAGCTAGCGCTGTCACTGACTGGGCAACGTAACGTTATGTCCCTGACTGGACATGCAGTAGCTAACTTGATGCCCTGAACTCTCgtggagacggtgtgtgtgtttgttcatcaTATATAgctatagctaactagctaatataTAGCTAACCTTAGTCGTTGGTTTAGTCAGATACTACTGACATGGATTTCAACGTGAAGAAATTAGCTTCGGATGCAGGAATTTTTTTCACTCGAGCTATACAGTTCACAGGGGAAAAGTTTGGACAGGTAGAGAAGACTGAGCTGGATGCCCACTTTGAGAATCTGCTCAGCCGTGCTGATTCCACTAAAAACTGGACAGAGAAAATCTTCAGGCAGACAGAGGTTCTGCTGCAGCCCAACCCCAGTTCCAGGATTGAGGAGTTCCTGTATGAGAAGCTTGACAGAACGGTTCCCTCCAGGCCAAATAATGAAGAACTGCTGGGTCATTACATGCAAGATGCGGCAAAAGATTTTGGTCCTGGAACTCCATATGGTAGCACCCTGATCAAAGTAGGCGATTGTGAGAGGAGACTGGGCAGTGTACAGAGGGAGTTCCTACAGACCTCCGCTATCGGCTTCCTCACCCCACTCAGGAACTTTCTGGAAGGAGACTGGAGGACCATCTCAAAAGAGAGGCGTCTCCTGGAGAACCGCAGACTGGACCTGGACTCCTGTAAAGCACGGCTGAAGAAAGCCAAATTAGCAGAGTCCAAGGCTGCGGCTGTGCCTGATTTTCAGGAAACCAGGCCCAGAAATTATGTCCTCTCTGCCAGTGCATCTGCGCTCTGGAGCGAGGAGGTGGACAAAGCAGAACATGAGCTTCGACTGGCACAGACAGAGtttgacagacaggcagaggtcaCACGGCTCCTGTTGGAGGGCATCAGCAGTACACACGTGAACCACCTGCGCTGCCTGCATGAGTTTGTGGAGGCACAGACAGCCTATTACAAGCAGTGTCACCTGCACATGCAGGACCTGCAGAAAGAGCTGGACAGTTCCAATGGCGATGTGTTTCCCAATGCGTTTGCTGGTAACCCAGGCCACTCCATGGCCTCCGGTGGCTCCTCTCCCCTGGACCCTGCCAGCGCTGTGGAGACAGACACGCTGAAGATCGAGGAGGTGCAGGCCCCTGCCACAGGCACACGCAAGGCCAAGGTCCTGTACGACTATGACGCTGCCGACACCAGTGAGCTATCCCTACTGGCTGACGAGCTAATCACAGTTTACACAGTGCCAGGCATGGACTCAGACTggctggtgggagagagagggaaccagAAAGGGAAGGTGCCTGTCACATACCTGGAGCTGCTCAGCTAAAGAAATAAATTGAAAGATGCACGCTTGCAACATTGCACTCACATGCCTTCAAACATGCTGACGTTGACAAATTCAACCAAACACACCCACATGCTGTACGCACACGGACCGCATTACATCATTGGTGAATATGAAGGCAAATGCACAACATTGAATATGGAGGAATAGTTACCATGACAACTCGGCCGAAAATTCTGAAATGTAAGATATTTACTTACTGAAATGCCCTGTATTATTCAGGCTTTGATGACCTTTGGTGACCTTTCACAGCTGTGGAAAAAGCTTCATACAGCCTGCCCACACACTTGCACCTGTTTTAGACATCTTTCACAAATCCATTATTTTTATGTGGAACATTCCATACACCCTGTGCACCTCTCGTTAGTCCACATTCCTATATTGTCATTTTCCTGGACACCTCTACCTGGCACTGAAACATTTCATGGCCATATGCCCTGCTTAGTGACTAACCAGAAATTGAAGCACTCCTAGTCTTTTACTAACTGCCTTAAAATAATGGGAGAGAGGCTGTGTCCATCTGCTATAACTCATAGAATGTATTGGACACACTGCAATGTCCACACTCCAGTTTGCCTGTTCGCTTAGGACACTTATTTTGAAGAGGACAAGCCAGATCTTACACAGAACATACATTTTGGCATGCAAAACTGTAACTTATTATTTAAGTATCTGTGGTGAGTTATATTCCCATTTGTGTCCCTTTTTTTTAGTTTGTTCTTTTTGCTGTTCCGTTTCTTTAACATGTCATTATTCCTTCAGTTGTCTTTGTATGTTTTTAGTTGAATTGTTTGTTCCGATGTCTTTTCTGTGATAGTCTCAGTGTCTTCAAGACAGGACCTAGGCTGCTACATGTGCTACTGGCAGGAGTTAGTCAGACTACTCTGCTCAATGCAAAGCCTCTGTCTTTCTTGTAATCAGAATTTTAATGCCTGTATATTTATTTCTCATAGACCTTTTAGTACCAAAGCAAACTTAAGTATGCATGCACTCTGTCATGGTTTGTGATGCTGTGACTGTTTTGCCATATCTTGTTTTGACCCTTTTCTGCCTTTTACTGTCAATGTATTTATTGTCTGTTCCCAAGCCATGCTGGGTGAATGCGTAGGATGTAATAAAAAATATGCTTTGGACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553008 lncRNA downstream 6578 22543363 ~ 22543636 (-) True G486575
TU553006 lncRNA downstream 9403 22540602 ~ 22540811 (-) True G486573
TU552379 lncRNA downstream 20381 22528485 ~ 22529833 (-) True G486037
TU552358 lncRNA downstream 35530 22514437 ~ 22514684 (-) True G486024
TU552300 lncRNA downstream 123086 22424226 ~ 22427128 (-) True G485969
TU553019 lncRNA upstream 7448 22580000 ~ 22580206 (-) True G486586
TU553027 lncRNA upstream 15422 22587974 ~ 22588195 (-) True G486594
TU553045 lncRNA upstream 42547 22615099 ~ 22615377 (-) True G486612
TU553065 lncRNA upstream 64202 22636754 ~ 22636967 (-) True G486623
TU552991 lncRNA upstream 70243 22642795 ~ 22644593 (-) False LOC110525506
XM_021605631.2 mRNA downstream 85853 22460769 ~ 22464361 (-) True LOC110525495
XM_021605632.2 mRNA downstream 86066 22460769 ~ 22464148 (-) False LOC110525495
XM_021605629.2 mRNA downstream 92466 22441244 ~ 22457748 (-) False LOC110525493
XM_036979623.1 mRNA upstream 234 22572786 ~ 22577536 (-) False LOC110525497
XM_036979618.1 mRNA upstream 234 22572786 ~ 22579306 (-) False LOC110525497
XM_036979622.1 mRNA upstream 234 22572786 ~ 22579306 (-) False LOC110525497
XM_036979624.1 mRNA upstream 234 22572786 ~ 22579306 (-) False LOC110525497
XM_036979619.1 mRNA upstream 234 22572786 ~ 22579318 (-) False LOC110525497
TU552199 other downstream 269188 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 286861 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 715854 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1115495 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1252041 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 265101 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 678734 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 812982 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 817465 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 1010484 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile