RNA id: XM_021605652.2


Basic Information

Item Value
RNA id XM_021605652.2
length 1521
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110525500
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22593509 ~ 22617566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGGTTTGTAGTATACTAGAACCATACCCAATTTACTGTGTGGGTTACCGGTGGCATGTCAGTTGCATTTTCTTCCTAGCTTTAGCTTGCGATATGTGGAAAAGAGATCAAATGTCATGATAGAAGAATTAGAGGCTGTTTGAACAGAAAAGTGCCTGACAAATGTATTGCTTGTTCTACAATGTATTGTACTCCAAGATTTCAAGACGGGTCAGTAGTTAGTCAAGAGCATTTGAGTCAGCATCGTATCAAGCACACAGAATAAAAAGTTGTGAGGTGCCAATACACACTGTGGTCGGTCTCAAGgtccattacaataCCCTTCAATGGCTTTTTTTGTGAAAAAGAAGAAATTCAAGTTTCAGACACATTTGACATTGGAGGAGCTGACTGCAGTGCCTTTCGTGAACGGGGTATTGTTCTGCAAGCTGAGATTGTTGGACGGTGGAGACTTTGTTGCAACTTCATCAAGAGAGGAGGTTCAGGAGAACTGTGTTTGCTGGAAGAAGAGGTTTACCTTTGTGTGTAAAATGAGCACCAACCCCACGACTGGAGTGCTGGATTCCGCCATCTGTCGGGTCTCTGTGCGGAAGGAACTCAAAGGAGGAAAAACATATTCAAAGCTGGGTTTTACTGACCTCAACATGGCAGAGTTCGCTGGCTCGGGCTCTGCAGTCCGCTGTTGTCTGCTGGAGGGATACGACACCAAGAATACTAGGCAGGACAACTCCATACTGAAGGTGACTATTGGGATGGCCCTCCTATCTGGAGATCCGTGCTTTAAAACTGCCCCCAGCACAGCCAAGTCCATCTCCATCACAGGCCAGGACCATGTCCTGCAGCTGGACTGTAAGGGGGATGGCACTGGAACCCCTAACCGGCCCACTTCTCTGGGCCAGTCCATGAAGCCCAGGCCCTCGATCATCAGCTCAGGTCTTCCAGAGGAGTCAGACCAGACCCAGGCAGCTAGCCCAGGGGAAGTATTCCAGTCGGGGCACTCTCGTAACTCCAGCTATGCCAGCCAGCTGAGCAGGATCTCAGGCTGCAGCACAGAGCACTCCTGCTCCTCTAGTATGTCTGACCTCACACACAGGAGGAACACCTCCACAGGAAGCGGCATATCTGGGGGCCTCAGTGTGACAGTAGACACtccaacagagggagagaggccaGGGagaccccctctaccccctcggCCCGTCTTGCCATCCAACAGACCCCCCAGGAGGAAGCAGGATTCAGTGGAGAGCCATCCCTCCTGGGTGAATGACACCCGCATCGATGCCGACGATATTGTTGAAAAGATCATCCAGAGCCAGAACTTTGCTGACATAAGTAACACTGAAGACAGTAACCTGCGACTGTTTGTCAGTAGAGACGGCACCACATCCCTGAATGGTTTACTGCGcagtaacagGGTGTGTGCTGGTGTCTATGAGCAAGTGGTGATAGAGAGCCATTACGACTGGTGAAGATTAATTTTAATTGAGGCCTCTGCAATGAAGCTTGTGGACTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553027 lncRNA downstream 5314 22587974 ~ 22588195 (-) True G486594
TU553019 lncRNA downstream 13303 22580000 ~ 22580206 (-) True G486586
TU553008 lncRNA downstream 49873 22543363 ~ 22543636 (-) True G486575
TU553006 lncRNA downstream 52698 22540602 ~ 22540811 (-) True G486573
TU552379 lncRNA downstream 63676 22528485 ~ 22529833 (-) True G486037
TU553045 lncRNA upstream 2723 22615099 ~ 22615377 (-) True G486612
TU553065 lncRNA upstream 24378 22636754 ~ 22636967 (-) True G486623
TU552991 lncRNA upstream 30419 22642795 ~ 22644593 (-) False LOC110525506
TU552992 lncRNA upstream 30419 22642795 ~ 22644593 (-) True LOC110525506
TU553087 lncRNA upstream 54395 22666771 ~ 22667052 (-) True G486642
XM_021605638.2 mRNA downstream 14111 22572786 ~ 22579398 (-) False LOC110525497
XM_021605640.2 mRNA downstream 14111 22572786 ~ 22579398 (-) False LOC110525497
XM_036979615.1 mRNA downstream 14111 22572786 ~ 22579398 (-) False LOC110525497
XM_036979617.1 mRNA downstream 14111 22572786 ~ 22579398 (-) False LOC110525497
XM_036979620.1 mRNA downstream 14111 22572786 ~ 22579398 (-) False LOC110525497
XM_021605656.2 mRNA upstream 15579 22627955 ~ 22636391 (-) False LOC110525501
XM_021605657.2 mRNA upstream 15579 22627955 ~ 22636391 (-) True LOC110525501
XR_002473764.2 mRNA upstream 31776 22644152 ~ 22646088 (-) False LOC110525506
XM_021605681.2 mRNA upstream 70209 22682585 ~ 22692496 (-) True ptgesl
XM_021605683.2 mRNA upstream 114709 22727085 ~ 22730428 (-) True derl3
TU552199 other downstream 312483 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 330156 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 759149 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1158790 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1295336 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 225277 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 638910 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 773158 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 777641 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 970660 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile