RNA id: TCONS_00031982


Basic Information

Item Value
RNA id TCONS_00031982
length 1554
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_016210
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11651176 ~ 11662923 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtaataaagataCCACATTCCTAGTAAACATAAATCCCAAGGTGTCTGTTTGCACAACATAAGCCAAATAAACGTAGCTTACTGTCAgcatttataacaataatattattttacaaacagCGAGTTCGTTGATTAGCCAGGCAGTTGTCATTCAGCAGCAGAGCACAGCTGTACCAAGGGACTTACGGTGGTTTGATGGAAATATTTATTCTCTAATGGGGTTGTAATCTTTATCCGAAACATCCGCTGCAACCGAAGTGCCGATCGTTACAAAGTCAACGGGTAAATGAGCGAGGCTGACATCTTCCACTCTGCCGATATGGCAGAAGTAAACCGCATCCACTATGAACTAGAATATACAGAAGGCATCAGTCAACAGATGCGGATACCTGAGAGGCTCAAAATCGCCTCCGGTTCTTCAGAGGAACCGCCTGGTCTCCTAAATGCATCTCACAGTACTATGATGCATGTGCCAGAAAGGATTGTGATTGCAGGAGATGATAATGACGCTCGCTTTGGAAGACCCAGAGATCTAGATTTGATCCAGTCTACTCCACTAGAAACAGTCGAACTGAAAACTCCACCACGGGTTCTTACCCTCAATGATCAACCTCTGGACTTCCTCGAGCCAGAGCCAGCAGCAAACTCCACTGCCCAGCCGAGAGAAGAGATGAAATCTCACTTTAGGTCAAGACGGGAGCGATGTAGGAGTGAAAACTCTACAATGCGTCGCAAtggacaaataaacaaacatgatttTGCAAGTCCGTCTCCATCTCGTGCTCCTGTCCGTGTTTGTCCCCCTCTTATAAGTCCTGAGGACAGTCAGAATTTAAACAGTGCCAGTGGTGTCCTCAATTACATCAAGAGCACGACTCGCAGGGCTTACCAGCAGGTCCTGGAGGTGCTGGACGACAGTCAGCGCGGTCGTGCATCTCTTGTGACTTTCGATGCGAGTGTGGAGAACACTCCTGATGATGCTGGTTTAACAGACGCTGCCTCACTGCGACGACAGATTATCAAGCTGAATCGAAGACTGCAGCTACTGGAGCATGAGAATAAAGAGCGAGCCAAGCGTGAAATGGTCATGTACTCCCTCACTGTTGCATTCTGGTTAGTTAACTCATGGATCTGGCTTCGTCGCTAGAGAGcctcttttttttccacacatccTTTAAGtgtcaaactaaataataaaaatacgtTTCATTCACAATGTAAAGTTGGTGTTTTATGATTTTCAGTTCATAAAAGAgtcaatttaataatataacagtTGCACTTTCTATAACAGTCTGATTATGCTCAAACAAATGTATCTagttattttttaagttattgtttttttgtcattgttatgGTGTTTTTGTAACTGTTTTTGTAACTGTATGTATCATGGTTATGTGCATTGTGATGTAAAgatgtaaatgtttataatattcCATTTTTGTGAATACATGGAAGTTTGCacttatatttcattaaaaagtgtTTATGCAGGAACATATTAAAAGATGTGGGATCACCAAAGAATTAAAGTGCAAAATGCATAAA

Function

GO: NA

KEGG:

id description
ko03029 Mitochondrial biogenesis

Ensembl:

ensembl_id ENSDART00000145108

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033779 lncRNA downstream 93052 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00031977 lncRNA downstream 313193 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00031976 lncRNA downstream 319860 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031975 lncRNA downstream 392798 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031964 lncRNA downstream 623985 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031984 lncRNA upstream 97975 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00031986 lncRNA upstream 313410 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00033352 lncRNA upstream 314185 11977036 ~ 11978594 (-) True XLOC_016213
TCONS_00033780 lncRNA upstream 1041106 12703957 ~ 12704384 (-) True XLOC_016218
TCONS_00031994 lncRNA upstream 1157148 12819999 ~ 12821531 (-) True XLOC_016219
TCONS_00031981 mRNA downstream 2445 11633253 ~ 11648731 (-) True XLOC_016209
TCONS_00031980 mRNA downstream 138357 11508691 ~ 11512819 (-) True XLOC_016207
TCONS_00031979 mRNA downstream 146398 11483176 ~ 11504778 (-) True XLOC_016206
TCONS_00031978 mRNA downstream 146829 11483072 ~ 11504347 (-) False XLOC_016206
TCONS_00031974 mRNA downstream 392629 11216958 ~ 11258547 (-) False XLOC_016203
TCONS_00031985 mRNA upstream 185659 11848510 ~ 11912347 (-) True XLOC_016212
TCONS_00031987 mRNA upstream 356490 12019341 ~ 12079718 (-) False XLOC_016214
TCONS_00031988 mRNA upstream 376866 12039717 ~ 12051183 (-) True XLOC_016214
TCONS_00031989 mRNA upstream 441538 12104389 ~ 12243213 (-) False XLOC_016215
TCONS_00031990 mRNA upstream 491989 12154840 ~ 12242695 (-) True XLOC_016215
TCONS_00031958 other downstream 745997 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 1903745 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 1904183 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 1962991 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 2107015 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031991 other upstream 561572 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 1589301 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 3331542 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 3365795 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 3439252 15102103 ~ 15107716 (-) True XLOC_016253

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_02903759_02904287.mRNA True 257 mRNA 0.52 2 CI01000004 2903759 ~ 2904324 (+)