RNA id: XM_021605681.2


Basic Information

Item Value
RNA id XM_021605681.2
length 2497
RNA type mRNA
GC content 0.44
exon number 7
gene id ptgesl
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22682585 ~ 22692496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACAAGTCCCAACGCACAGAATTGTGGGAATTTATGTAAAATTAAGATGGCAGCCGCCTGTGCGAGAACTCTCAGTAAGGTCGGCTGGCACATTTTGGAGTCTCCACCATGTCGTGCTGGGAATATTGCCTCCCTGATTCCAAGGGTCCCGCTACATGGATCGAGCAGGGCCTACAGAACAGGTGGTGCAGGATTCCGTTCCAAACTGCTTTTCAGCACACCTCTGCGCGGTGGCAGGGTCCTGGGGTGTGCGTTCCTGTTTGGAGGGGGGCTTGGCTTGTATCAAACAATAAAGCTCTCCGTCCAACATCACCTTGCTGAAGAAGATGTCAAGCCTTCTGTTGGTGGCCTGAAGTTGACCTTGTATCAGTACAAGACCTGCCCGTTCTGCAGTAAAGTGCGAGCTTTCCTAGACTACCATGGGCTTCCATATGAGATTGTGGAGGTCAACCCCGTCATGAGGAAGGAAATCAAGTGGTCAACTTACAGAAAAGTGCCAATTGTGATGGTGAATGATGATGTGCAACTGAATGACTCCTCATTAATAATCAGTGCCTTGAAGACACGGTTGATGAGCAAGGATAAAACCATCTCAGAAATTCTGCGCTGTTACCCAGAGATGAAGGCTGTCAATGAGAAGGGGAAAGAGGTGATCGAGTTCAACAACAAGTACTGGGTGATGGTGAATGAAGCTGAAGGTCAGACAATGTACCCCGAGAAAGATTCCAGAAAGGAGGAGATCAAATGGCGTAAGTGGGCAGATGATTGGCTGGTGCACCTGATCTCGCCCAATGTTTACCGGACCACTGGAGAAGCCCTGGCCTCCTTTGACTATATCGTCCGTGAGGGCAAGTTTGGCACTTATGAGGGATTCTTTGCAAAGTATGTTGGAGCAGCTGCCATGTTTGTCATCTCAAAAAGACTGAAAAGTAGACACAACCTGCAGGATGACGTGAGACAGGATCTGTACAAGGCAGTCAATGAGTGGGTGGTGGCCATTGGCAAGAAGAGGAAGTTCATGGGTGGAGACCAGCCCAATCTGGCTGACCTGgcagtgtatgggaTCCTGAGAGTGATGGAGGGTCTTGAGGCCTGGGATGACATGATGGAGAACACCAAGGTGAAGAGCTGGTACAGACGAATGGAGACAGCTACAAAAAGCCACAAGGGCCAAACTGAACCTGCTCTAAATATTGACCAGCACTAGGAGATCTGATTCAATAGCACTTCCAGCCCTCACTTAATCAGGAGATGTGAAGAGTGATTGCATTAAGGAGAGATGGGTGAAAAAAATGCTATACATTTGTCCTAAGGCTCTTGTCCTCCTGATGCAATTCACAGAAATTGACTTCTCTAGCTAATATGGATTAGGCAAAAGGCCAACCTCTTGATTAATTTCCTGTGAAAATGCACCGTGTTAATTTGCTTGAATAAACTTGCAGCAGCAAGCCGTTTAGTTGTAGATCCTTGATTACTGTGGCATTCTGTCTACCTGGTGTCCCACAGTGTCAAGGCTGCAGTAACATGTGCACTGAGTAtactaaacattaagaacacctgctctttccatgagtcTGACCAGGTGGAAGCTATGAACCTTATTGTCACTTAATAAATCTACTTCagtggggaggagacaggttaaagattttttaagccttgggacaattcaggcatggattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaatatttaagtgcctttgaatggtagaaggtgccaggcgcaccggtttgtgtcaagaactgcaacactgttgggtttttcacgctcaacagtttcctgtgtatatcaagaatggttcacgaCACAACTGAGgtcgacatgggccagcatccctgtggaactctttcgacaccttgtagagtccatgccccggcgAATTGAGGCCATTTTGAGGGCTTAAGGGGAGACGACAttagatgttcctaatgtttggtatactcagtgtatataacaTAAGTAAAATAAAATTAGCAGCTTTAAATTTACATTGCATCTATGTAAACATTGTCAAATACCTCCTACACACAGTCTTAGCATTTTGGATTAAATTTTTTCGCCCCCATTCTATTTTCCAATATACTTGAAGGTTAAAATGATTGCACGAGCTAACATTACTTAGTTTAATTAGCTACATCAGATAATCAGTATATTATTTTCCTCAGGGTTTGAATTCCCCTAAAAAACTGCACAGTAATCCTGTTTCAAGATTCTCTTTCATCtgttaacttcttgactgatgcaAATTCTTCCTCATTGTTGTTCTTGAGGGTTCCAGTCATAGCCAGATTAATTACATTATCATTCTTATCAACTATGCAGGGTGCAAGAAGTGAAATGATTATTATAATTTGGCAGCATCCATTGGACAAAGTGGTACCGAAACTCCTAACCAATTTAAAAACACCCCAATGATGTTCATACATGTAAAAATGTTCAATAAAAATAAGTAAACTGA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K05309 PTGES2; microsomal prostaglandin-E synthase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553092 lncRNA downstream 8131 22674213 ~ 22674454 (-) True G486647
TU553088 lncRNA downstream 14165 22667816 ~ 22668420 (-) True G486643
TU553087 lncRNA downstream 15533 22666771 ~ 22667052 (-) True G486642
TU552991 lncRNA downstream 37992 22642795 ~ 22644593 (-) False LOC110525506
TU552992 lncRNA downstream 37992 22642795 ~ 22644593 (-) True LOC110525506
TU553125 lncRNA upstream 19911 22712407 ~ 22712833 (-) True G486679
TU553133 lncRNA upstream 38442 22730938 ~ 22731896 (-) True LOC110525508
TU553139 lncRNA upstream 46999 22739495 ~ 22739694 (-) True G486691
TU553140 lncRNA upstream 48448 22740944 ~ 22741206 (-) True G486692
TU553177 lncRNA upstream 87507 22780003 ~ 22781555 (-) True G486727
XR_002473764.2 mRNA downstream 36497 22644152 ~ 22646088 (-) False LOC110525506
XM_021605656.2 mRNA downstream 46194 22627955 ~ 22636391 (-) False LOC110525501
XM_021605657.2 mRNA downstream 46194 22627955 ~ 22636391 (-) True LOC110525501
XM_021605653.2 mRNA downstream 65019 22593509 ~ 22617566 (-) True LOC110525500
XM_036979627.1 mRNA downstream 65027 22593509 ~ 22617558 (-) False LOC110525500
XM_021605683.2 mRNA upstream 34589 22727085 ~ 22730428 (-) True derl3
XM_021605680.2 mRNA upstream 38011 22730507 ~ 22746609 (-) False LOC110525508
XM_036980626.1 mRNA upstream 66140 22758636 ~ 22759601 (-) True LOC110525513
XM_021605690.2 mRNA upstream 83503 22775999 ~ 22777465 (-) False LOC110525517
XM_021605691.2 mRNA upstream 83504 22776000 ~ 22777439 (-) True LOC110525517
TU552199 other downstream 401559 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 419232 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 848225 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1247866 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1384412 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 145157 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 558790 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 693038 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 697521 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 890540 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile