RNA id: XM_021605680.2


Basic Information

Item Value
RNA id XM_021605680.2
length 3332
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110525508
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22730507 ~ 22746609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCGGGTGGTATTATCACTCCAGAGTCCAGACTGTAAAACGCGTATTTGAAGAAAGAAGAAAGAATCAGAACCTATATAAGAGCCCACAAGAAGCTGCGCCGTCACTCTTCGGCTGAAGAGAGAGCTGAAGAAAGAAGAAAGAATCAGAACCTATATAAGAGCCCACAAGAAGCTGCGCCGTCACTCTTCAGCTGAAGAGAGAGCTGAAGAAAGAGCTGTCCACGGGTCAAaaagatgatgataatgatgcaGACTTCTGTCCTATCTTGCGTCTTTACGCTGCAATGCCTCCGAAGCATGCATTGTTCGCCAGTGCCCGAAGCAATCAGCTACAAAGCGACGCCGGGATGGCTCCAGAGGTTTGATCTCCATGACgtaaagaagagaggaagagtggccCATCCTCAGGACACACTCAAAGACACAGCCTTGGCCATAGGAGACCCTGTAAAAGCAGCACTGGTAACTAACAACACTGAGGAGTCTAACCGCCCCCGGTGTGGCGTCCCTGACTACCCCACACTGAAGGATGTCATCTACAGGGGGAGACACAGGCAGAAACGCTTTGTCCTGTTTGGGGGGCGCTTGGAGAAAACTGACCTCACCTACAAAGTGGTTCGTTTCCCCTGGCAGATGAGCGAAGACAAAGTGCGGCGTGTCCTGCTGGAAGCCCTGAGAGTGTGGAGTGAGGTCACACCCCTCACATTCACTGAGGTCAGCAGTGGAAAGGCTGACATTGTCATTGACTTCACTAGTTACTGGCATGGAGATAACCTGCCCTTTGACGGCCCTGGGGGCATTCTAGCCCATGCCTTCTTCCCCAAGACCCACAGGGAGGGCGACATCCATTTTGACTATGATGAGGCGTGGTCCCTTGGCAACTACATGGGCACAGACCTCCTCCAAGTGGCTGCTCATGAGTTCGGGCATGTTCTTGGCCTGCAGCACTCCCAGGAACCGGGCGCAGTGATGTCCCCCTATTACAGCTTCTCCTATCCCCTGGAGCTGAGCGAGGATGACAAGCTGGGGATCCAATACCTGTATGGCCCTCGTCCACATGTCCAGCCCCCATCTCCACCCCAACCACTGCCACAAATCACTACAGATACCAATGAGATCATTAGTAGTATTCCTGACGCCTGCCAGACAGACTTCGATGCTGTGTCTATGATTCGCGGAGAGCTGTTTTTCTTTAAGTCACGCTATGTGTGGCGCATTCGGGAGGGGCGGCTGGAGGCAGGCTACCCCGCGCTGGCATCCCGCCATTGGAGGGGGATTCCAGAGAACATTGATGCAGCCTTTGAAGACCAATCAGGGAATATCTGGTTCTTTCAAGGTCAAAGCTACTGGGTGTTTGATGCAGAGAGACAGATCACAGGGCCAGACTCTGTGCAGAGCCTTGGCCTGTCAGTCTCCCACATCCAGGCAGCTCTGCTCTGGGGCCAGGACAACAACTacaacacctacttattcaagtcAGGCAGCTACTGGAGGTTTAGCCCCAAGGAGAACCGCGTCGACTCTATCTACCCTCGCAACATGCAGGACTGGCGTGGCATCCCCAGTGATGTCGACGCAGCCTTCAAGGACCAATATGGCTATGCCCACTTTATCAGAGGGAGGCAGTACTGGAAGTTTGATCCTGTGGAGATGAATTCACTACAGGGGTATCCTCGCTATTTTCACATGGACTTCTTTGGTTGCAGAAATGTATGAGTATCATTAGGTGATAATGCTCTCAAGATCAAattcaagtccaagtcaagtccaACCATGCTCTTGTCCTTATGGTCCTTTCAAATACAACATTATAATCTTGTGCATTTTGGGGAACAAGACCATTTTGCGTAACAAATTATTTAGGTGAAGACTTTATTACTTAACTTGAGTGATTTCCACAAAATGCTTGCTATTCctcaaatatgtttttgtttactCATTATCTTAACACTGAATGGACTAGATCCTTTTTTCTTCTCAGGAAAACACTAATTCAAATGTTTCCTCAGAGTTTGGACTTCATGTGCAGCTATATAGTTGTATTTATTTGTTGCTGGGTTGGGTTTTACTCTctggtgctatctagaaccttaaagggttcttcggctgtccccataggagaacgctTTGAAGgacccttgttggttccaggtagaacccttttggttccaagtagaaccattttggattcaatgtagaaccctttgCAAGAGTGTACGGTCAGAAGAGGCGTTGGTAAAGACCGTGGGCTGAGAAGACAGCGCCATCTGCAGGAGGTTAGTAACTGTATCGTGATGTCTAATTTACTCAAGAGATGTTGCAGTTTGTTTTCTTCTTAAAGGGAAATATGTTTAAGGCACTGCAATTTTCTATGAAGTCTTTTTTTTTCGTTTTACTAATTAAGGTGCTAAATCTGGAAATCACTGACAATCAGGGACACTTTTTGTCCTCTAAAGTTATGAACACTTACTCACAGTCTTACTTGTAACACGGTCACATTTATGTTCATTCTAAGATAGCTGTACTTAATTTAATAATGGTCCATCCATGGTGCTCTCAGTCAGTCCAAATGGATGGAATGTTCCATCCTTGGTGCTGCATGATGTGAATCTAAGCCATGATGATAACTTACTTTTTGGAAGGGCCATTCATTACATTTTGTAAGTGCAGGGCACTGATGTTGTTAGTTCTTCTTAGCCAGGATACAGCCTGAGATCCTCTGGTAGGGCACTATTGACCATTCCAAAATCTGGTGTAGGTTGAAAACGAAAGGAGACTGGGCGTTTTCCATTAGGGAAAACCTTTGAACCTAGCCTTTGAAATGGTCTGCCAGAGGAGACCAGGCTGCAGATTCAGTGGCTCTTTTTAAATCTCTGCTGATGACACTTTTATAAAGATGCTTTTAATGTACGATTTAAATGATTTTAATTAGCTATtatttctttgtttctttgttaGTACTTTTATTTTTTGATGTGAAGCACTTTGTTACCTGTATTGAAAAGCGCTGTATAAATAAagttattattagtattagtattattatatCTGCTTTACTGTAAAATATGTATTTGTGATATTTGTGTCATTGTTTGACAGCCAATAGCCGCAGCCTGGCAGATCTCTTCTAAAGTTTTGGGTGTTGACTATAGAGCTCAGAATCATTTCAAGACATAACTGTCCTTTAATTAAAATAGCCATCATCTGTTCTGATTACATATCTTTATGTGTTAACATGTTTTTCTACTCAAATGCCACATTTACTATGCAAATACAAAAATATTAATAACGTACTGTGTTTTGGTACAAATATAATATTTAAGCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553125 lncRNA downstream 17674 22712407 ~ 22712833 (-) True G486679
TU553104 lncRNA downstream 40350 22688955 ~ 22690157 (-) True G486658
TU553096 lncRNA downstream 41860 22680380 ~ 22688647 (-) True G486651
TU553092 lncRNA downstream 56053 22674213 ~ 22674454 (-) True G486647
TU553088 lncRNA downstream 62087 22667816 ~ 22668420 (-) True G486643
TU553177 lncRNA upstream 33394 22780003 ~ 22781555 (-) True G486727
TU553170 lncRNA upstream 67644 22814253 ~ 22827725 (-) True G486721
TU553279 lncRNA upstream 240305 22986914 ~ 22988291 (-) False G486817
TU553280 lncRNA upstream 241064 22987673 ~ 22988702 (-) True G486817
TU553277 lncRNA upstream 259525 23006134 ~ 23010715 (-) True G486815
XM_021605683.2 mRNA downstream 79 22727085 ~ 22730428 (-) True derl3
XM_021605681.2 mRNA downstream 38011 22682585 ~ 22692496 (-) True ptgesl
XR_002473764.2 mRNA downstream 84419 22644152 ~ 22646088 (-) False LOC110525506
XM_021605656.2 mRNA downstream 94116 22627955 ~ 22636391 (-) False LOC110525501
XM_021605657.2 mRNA downstream 94116 22627955 ~ 22636391 (-) True LOC110525501
XM_036980626.1 mRNA upstream 12027 22758636 ~ 22759601 (-) True LOC110525513
XM_021605690.2 mRNA upstream 29390 22775999 ~ 22777465 (-) False LOC110525517
XM_021605691.2 mRNA upstream 29391 22776000 ~ 22777439 (-) True LOC110525517
XM_036979661.1 mRNA upstream 45198 22791807 ~ 22793761 (-) True LOC110525531
XM_036980627.1 mRNA upstream 47425 22794034 ~ 22797348 (-) True LOC118964915
TU552199 other downstream 449481 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 467154 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 896147 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1295788 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1432334 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 91044 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 504677 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 638925 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 643408 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 836427 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile