RNA id: XR_005052037.1


Basic Information

Item Value
RNA id XR_005052037.1
length 8642
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110525523
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22848530 ~ 22895023 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctagctaaaacagtaggtgagacaacaacagctaatcagctagcacaacaacagcagataaaatggcgttgactaggcagggagggtcggattaactacacacagagcctgagtgtgGCTGTTGCATTTTATATTGTTGTTCGGTATagttttggttttgtacaccagctgttaatacaatatttttggttctggaaaatatatttcacagcgctttagatggtacaatgattctctacactagcttgttttgtcacaaactgaaattaagtgaactattagaattttaggcCCCACCAACCAGGAAAAGGTGGGGAAATTTCTGCGTAGTGCATCATTAAGCTATATTTTTATGACCTGCTCTTCAATGTCTTGTCCAATGAATGTGACTTATGCAATAGGTATTAGGCCTAGCCTACAGTGTCTCTGCAGCCTgccttttggaaaaatgtccCAAAGTGAAAAATCTTCAGTTCTTGGAAATGTTCCTCTTGCAGTTTGAAAGGAAACCCCTGCCAAACAAAGCACATTCCTAAAGCTGGAGGTTCCCTCAGCACTAGCCCTTGGTCATGACACTCAGTTCCATTATATATAAGTCATTGGACGAAGGCTTCTGTAGGGTAAGTTTTGTTAAGAGCCGCAATGCTTGGTCTGAGCATACACACCATCGCTCGCGGTACGGTTTTGaaaccttatctttcatatcggcgagtaataataaaaaaagtttaattgatacacaccttttatagggttagtgttcccacatggtcatatttccatgttacagcgcttgtttacaGAAAACAGATGGAAGACGGAGTGGGCTatctgtgctaattagctatctgtgTCTCCGAACACCTGTAAACGGAAGAACGATGCCACAaagttgtcactgaaaaatattGTTGGCTGCAAATGTGTTAAAGCGGGTTAAAACAGTCAGGGTGTATTTTGGATTTGTGAAAATATTTTGACATGATATGAAAATAGAgggatttatgtttctagaactgGACCATAATTGAGAATCGATTTAGAgggagtatttggctgttttggcttcCAGAGCCAATTCCCCCTTTAAACAGAatatgtttgtgcatgtgtgattGTGTCCTCCTTTGTGAGTTGTTCACCAAAATCCCCTAACCTCCCATACAAGACGGTCCTAGCCATGTTTTCTGTTTGCACTGCATAGCACAGTGTTTCCCAATCCAGCATAATAGGTACATGATAGGGTTAacttggctaagatcaagtgtagggttgcaaaattcaggaactttcaataaattccctggtttcccAAAATCCCATTTGGAGGATCCCGGAaccaggagggaataagcagaaaAATgcggaatcctccaaccaggatttctagaaaaccagggaatttattgaaggttgccagaattttgcaaccctaatcaagtgtagtatctgttcttatcagtttatcTAATACATCCCCCGTTGGGTGATTACTTATTAAATGGGGTTTTCAAATAGGGAGTGGGAAATGGGAGTTGCTCcacttatttaacctttatttaactgggcaagtcagttaagaacaaattcttatttacaatgacggcctaggaacagtgggttaactgccttgttcagcatCTACCCGGTATTGGAGTACCCCTGGGAATGGTGCACCACTTTTCAGGGGGTCACCAGAGGGTTGCCAGGTCAAATCTCTGGTCTGAAGTGAGCTGGCAACTGGAGGGTTGCTGCTGGTATCAAATCCTAAATGCCATTGCCAGCTGTTGTGCCCTTgagaaaggcacttaaccccccaaAACAACTGCTCAACAGGTGCCCAGTGTGGCAGCCCCCTCCTCCAACCTCTCCTATCCTGTAGAGGTATGTGTATCTTTTGGACGGGTTGAGATAAGTGGAAGTCACATTTCGGTTGGACCTTGTGATCTTAAAAGGAAAAATGTCTTGGTTGGATCTGTTAGGACTGGCTCTTTGGCTTTGGAAGATGTTTGACTGTGAGATCAGAGGTTAGTATACACAGTGTATGTTGACTATAAGAAAGGCCTTGAAGTATTACTTCACACCTGATCCTGATGGTCTACAGAAGACATTCCATCATGTTACTCTATGAAGAGTGAGCATAGACTGAAGGTCAGTTTATTCCCCAGTCTCTGTCACCCAGTCCCATTCATTCATAGTTACAGAAAAGAGCAGCCCTCTAGGTCCAGGTTGTGTGTTTGGGTGATCTGGTTTGACTCACATCTGAGCCACAGACAACTGCTACAGACAACTGTAGCCTACCCAGTATGTGTGTTGAGAGCCCATGTCAGCAGCTGGCAATATGCATTGCACAATCCAAACAGAGGTCAGATGGAGGTGAGAACAGGCCTACCCACACCTGACTGGGATGTATAGGCTTCAGTAAGAACACTCATTGTTGCAAGATGTCCCtatttctgtgtttttgttttgcaTTATAGGGGCAACTGTAAAGGAATATTCCAATGCTAAGTTTTACATTAATACTGCCAATAAGTGGAATGTTTGTTACTGTATTGTATTTCCCTTTAGTTATTTCAACATTCACGGTCTGGCCTGTCTCTTTGCCCTCTGGCTGTTCAGGAATGTGTACACTAGATATATTTCAATGGGGGGTCTGAATAAACAAGCACCTCCCCACCACAGggttgcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgcgcaCAGCTGAGAAACATTAGGCAGAGTTTAGGCCCACTCCTCATGAGCACAAGCCCTCTGCTGCTCTGCCATAAATGAGGTGAGGGAGGACAACGGGGAACTGTTAGAGAAGCTCTGGAAAGATCTCATAACTCCAGCACAAGGACCAGACAGCGTGTTCTCTTTATTTGCAACTCTTTTTGATGGATTATGTCAGTTAGTCTAAAGACGAAAGAGAATTGAAAGAGTTTTGGCTTCAAGTTGGAATTTCTTAATACGCCAAACAAAAGAGTTTAGGAAAAGTTCACTTTGTCACAGGCACAGATAATTGTCTTTAACCAGAAATGCTCCCTATGTCATTTTATATTTTCAAATGAAGCAAGTATAATATTTACTCTTAACTTTTTGTCGTCTTAATTGATTAAACAATGAGACTTTCCAGGCAGAGAGTTGGTACTTCCATCTGCACCCATCTTAAGAGCAGGCACAAAGATACCCAGAAAGACTGTTTTGGTTTAATGGTCACAGGCTATGCAGTGAGGTATAGTATAGCCAGAAGCAGCAGGTTGGGTTCGATTGTAGGAATCTTAGGGGAGAGCATACAGAAGAAAGGTTTTACTGAGACCCTCCCCCTCGTCTCCGGCAGTATAATTTAAATTTAAACTATGTCCATTTCTCTAAGAACTGTATTGCCTTGCCGATCCTTTTGGAAAGCCATTACCCCACTAATTGGTTCACCCATTTAGcagattttgtttatttttaggcTATTCTCAGTGCTATTCTCAATGTTACACAACCATTCCTTGAAGACAAAAAGTCAAATGTTCTTGTGCGCAACACCTAGCCTATTTTTCTTACTGCTTGGggtgattttatttttttcaggatgaaaaagaCTGCCTCATTTGTCCTTTAACACTGTTTTATAAGCTCTGCTGTTATAAAGCCCCAAATACTTTCCCTACCTTGGTCATCATGACAGCAAGGCCAGTTGTCCATGCACCTGGGTGAGATGTGAGCTAAtacacatggattgtgtattaAATCTTCATCTGTGACAGTAAGAACTTCTGACCGCAGAACAACCCCAGTTAGACCCAAACCAGCCAGtgactgccatctagtggagtTGACAGGAAACCTGAGACTGAGCAAGATGAATTCCAGAGGAGAAAGCCTTGTtttccagacttgtggagataaGGTGTTTTCCTTTTTATGGAAACCTCTTTTGTGTGTCCACACTGAGGTGTAAATGTATGGGTATCAGAGAGCCCAGTATGAAGAAGACAGGCAGGCCGGTGGGGACTAAGGctcagagtggagagagggggaagactgAAGGCACTGCTACAGGAACCACCGGCAAGGCTGCAGCCAAGACCACCACAACAGCACCACTGTCAAAGGTTAAAAGCAATGATGATCTGCTAGCAGCAATGGCAGGGGGAACTCCAGCTACGAACCGCACTGTGACCAAGAATAAGAGGACTGCCTCCACGGGGAACAGCAATGGTAACCCAGACAGTAAACCAAAGACTAGCACAGGTTCCTCAGCCAAACGTGTGACGTCCTCGACCTCCAAGGAGCCCAACTCATCAAGGGATCGTCTGCGGACATCCAGAACATCGCCTAGTAAGAAGCAGTCATCAGGGGCAGGGCAGGGAGATGTGGCCCAGGGAAAGTGCTCTCGCAGCCAGCAGCTAGCAGAGTCAGAGGGCCGCATGAACAAGTCTaaatcagacagacagatcagTGACAAGGTGGCCCTGGAGGCCAAGGTGGAGGACCTGCTGGGTTTGGCCAAGAGCAAAGACGTGGAGATCCTGCACCTACGCAGTGAGCTGAGAGATATGAGGGCTCAGCTGGGCCTGGGACGGGAAGAGGTGCCCCCAGAGGAGGGAGAAGGCGGAAGGGGGGAGGAGAAGTCCCTGGAGAGGGAGGTGTCGGCCATCACAGCAGCGGACGTGGAGTCCACGCTGCTCCTCCTGCAGGATCAGAACCATGCCATCCGTGAGGAGCTGAACCTGTTGAAGAGTGAGAACCGCATGCTGAAGGACCGGCTCAATGCGCTTGGCTTCTCCCTGGAGCAGAGGCTGGATGGCTCTGACAAGCTCTTTAACTACGCCTCCCTGAGCCCAGACCTGGCTGCCAGCAGCAGACACAGCGATGGCAGGTGCACTGGTACCCTTACGTCCTCTGTGGAGGGCTCTGCTCCGGGCTCCCTGGAGGACCTGCTGACGGACCAACAGCACGGTGGTTCATTGGACAACTTGGACAGTGAGTCCAGCGAGGTCTACCAGGGTGTCACATCCAGCGACGACGCCCTGGACGCCCCCTCcggagcctcctcctcctccgagtCTGAGAGCCTGCCCAGCCGAGAACGCTCGTGCCGGGGCAGCAGCGGCAACGCCAGCGAGGTGTCTTTGGCCTGCCTGACAGAGCGAATCCACCAAATGGAGGAGAACCAGCACAGCACGGCCGAGGAGCTGCAGGCTACACTACAGGAGCTGGCTGACCTGCAGCAGATCACCCAGGAGCTGAATGGAGAGAACGAAAGGCTAGGGGAAGAGAAGGTAATCCTCATGGACTCTCTGTGTCAGCAGAGCGACAAGCTGGAGCACTACGGCCGGCAGATTGAGTACTTCCGCTCTCTGCTGGACGATCACCACGTGTCCTACGTCCTGGAGGAGGACATCAAGAGCGGCCGCTACATGGAGCTGGAGCAGCGCTACGTGGACCTGGCCGACAACGCCCGCTTCGACAGGGAGCAGCTACTGGGGGTGCAGCAGCACCTCAGCAACACACTAAAGATGGCTGAGCAGGACAACGCCGAGGCCCAGGAGTTGATCGGCGCTCTGAAGGAGAGAAACCACCACATGGAGCGCATCATGGAGTCAGAGAGGCAGGACCGGGGGGCCATGGTGGCAGCGCTGGAGGAGTACAAGGCGGCGGTGAGCAGTGACCAGGTAGAGCTGAGCCGCTGCAGGGCCCAGCTGGACCAGGAGAGGCAGAAGGTGGCTGAGCTCTACTCCATCCACAACTCTGGAGACAAGAGTGACATCTGCCAGCTGCTGGAGGGTGTTCGGCTGGACAAGGAGGAGGCAGAGGGCAGGGCTGCCAAACTGCAGGAGGACCTGGGCCACGCCTGCAGTGATGTCACCAGGCTGCAGGACACCCTCAATAAGCTGGATGGGGAGTACCAGGACTTCCAGGAACAGGTACAGAAGCAGATGGCTGAGCAGAAGCGTGGGCTGGAGAAACAGCGCGGTGAGCTGCTGGAGAAGGAGACTGAGATCGGGGACATGAAGGAGACCATATTTGAGCTGGAGGATGAGGTGGAGCAGCACCGAGCAGTCAAACTCCACGACAACCTCGTCATCACAGACCTGGAGAACTCTGTGAAAAAACTGCAGGACCAGAAGCATGACATGGAGCGGGAGATTAAGATCCTCCACCGGAGGCTGAGGGAAGAGTCGGCAGAGTGGCGTCAGTTCCAGGCTGATCTGCAGACGGCCGTGGTTATCGCTAATGACATCAAGTCGGAAGCACAGGAGGAGATTGGGGATATGCGTCACCGTCTCCGCGAGGCCCAGGAGAAGAACGAGAAGCTGGGCAAGGAGCTGGAGGAAGTCAAGAACCGCAAgcaggatgaggagaggggCAGGGTGTATAACTACATGAATGCAGTGGAGAGGGATCTGGCTGCACTTAGGCAGGGTATGGGCCTGAGCCGTCGCTCCTCTACCTCCTCAGAGCCCTCTCCCACCGTCAAAACCCTCATCAAGAGCTTCGACAATGCCTCCTCACAAGGTACCCCAACCTGCGAGTGCCTAGTCCCCCCGACCTCTGCCCCTGCTGTCACATTACCACGCACTCCCCTGAGCCCCAGCCCCATGAAGACCCCTCCTGCTGCCGCCATCACACCCATGCAGAGACAGTCCATAACTGGGTCCATCTCAGCAGCcaaacccctctcctctctgaatGACAAAAGGCCCAGCTACACAGACATCAGCATGCCAGCAGAGCATCATCTTAGGGGCTCCTCTGCCAGCCGCCCTGCCTCTGCTCTGCAGAGGGTCTCAAACATGGACTCATCTAAGGCCATGGCCATATCAGAGAGGAGCGGAAGGACCCCCTCTCAGCCCTGGCCCGGGAGTATGGGGGTTCCAAGAGGAACGCACTGCTCAAGTGGTGCCAGAAGAAGACTGAGGGGTACCAGAACATCGACATAACAAACTTCAGCAGCAGCTGGAACGACGGCCTTGCGTTCTGTGCTGTGCTACACACCTACCTGCCTGCTCACATCCCCTACCAGGAGCTCACGAGCCAGGACAAGAGGCAAAATTTCACACTAGCCTTCCAGGCTGCAGAGAGTGTGGGGATCAAGTCCACTCTGGACCTGAATGAGATGGCCAGTACTGAGAGACCAGACTGGCAGAGTGTGATGACCTACGTCACGGCCATCTACAAGTACTTTGAGACCTGATGTGATTTCCCCACCCAACACTGCAAGCACAACCTGCAGCCCTGCTCGGAAGCTCCTCTGACCTCACTGCACCTCCAACACTTCAACTCGACATTCAACTCTGGTGTTATAGCTCACTTCACTGAACCACCCTTCATCCCAGCCGTGCCACACGCCGGCCACTCTGTCTCTGGTCTAGAGGCCTGCTAGATTTGAATCGCCATAAGAAACATACAAATAAGCTCACTGCAAGCTATTCATAATATTGCTATTGTGAACAGTCTTGCCCTTTTCACTGACACCTTACGTGTGATGGACACACAGCTTAAGGCCACTTCAAGCACCTATTCAGGGCCTGCTCTGTTGGGGATTCTATTTTTACTCTGATCCATTACTGGATAACCCGGTTGAGATGACCCTTAATCCAAATGATCTGGttaaaccagttggagaacatgCTACAGACTCTCCCAGTCGTTGTGCCTTGCACCCAGCCTTTACTCTTCTAGCCAAGGGGTTATCCAAAATGTTTCAGCCAAACCATACCCATTGTGTGTAGTATGTTCATGGCACTTATTTTCTATGGAAATAAGAGGGACAAATGTAACACTTTGTCAGGTGCAGGTTCATCTTTTATCATGGATTAAGTGCCTGTTTAAATTGCATCACTGACTTCCTAAGAGAGGTTGTAGCAAAAATGTCTCAATGAAACTGTTTCAATGCTCCATGCTTTCAAAGCATCTTTGGAGAAATCGAAGTGAAGCTTTTTAGAAACACTAGTTTAGAAACACTAGTTATTGAGCAGTTATATGAAAAACACTAGCTACATCATAAGGGATAAAGCTGTCAGGTGCTCTCACGATCACCTGTTAGATTCAAGCTACAATGTTGATGTGCTTTTGGTCTGTTTTTAGGAGCGTGAACATTGCTACAGTAGCATTTTGTATTGGTAACAGAGACCAATGAACTATACGGGACCAACACAATGCCTCTCCGTGACAGCTTTCTCACACAGAACTGTCTTAATCCTGAACCAAAAAAGGAATGTGTTTTTTCTTTATGTGAAGTCCAGGGCTAGACTTGGCAAAAGCCCTGCTTCTTGGTGATTTGATTGGACTGTTTGGCCAGGATGTTGAGTCTCAAGGTTGAACATTCTTCATAGTCACTTTTGTTGTCGTCATCAATCAAGATTGGGAAAGTTTTTCAACTGCAAAATGGATCAGTTTTGCTGCTGGACCCAAATGTATTAACATATTGTTAGTGTTGACACATTACTTCCACCAACGGCAGACTGATTTGCATTCACATTGAACTCCCAGGATTGTTCACAGTCCAGTGCTCTTGAACTATAAGATTGATGTGTTATTAGATACTCTAAGCTCAACTCACAATGGATTTAactaatcgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553170 lncRNA downstream 39998 22814253 ~ 22827725 (-) True G486721
TU553177 lncRNA downstream 86168 22780003 ~ 22781555 (-) True G486727
TU553140 lncRNA downstream 126517 22740944 ~ 22741206 (-) True G486692
TU553139 lncRNA downstream 128029 22739495 ~ 22739694 (-) True G486691
TU553133 lncRNA downstream 135827 22730938 ~ 22731896 (-) True LOC110525508
TU553279 lncRNA upstream 96225 22986914 ~ 22988291 (-) False G486817
TU553280 lncRNA upstream 96984 22987673 ~ 22988702 (-) True G486817
TU553277 lncRNA upstream 115445 23006134 ~ 23010715 (-) True G486815
TU553420 lncRNA upstream 322007 23212696 ~ 23214656 (-) True G486949
TU553423 lncRNA upstream 341428 23232117 ~ 23232587 (-) True G486952
XM_021605714.2 mRNA downstream 19485 22842480 ~ 22848238 (-) True LOC110525528
XM_036980627.1 mRNA downstream 70375 22794034 ~ 22797348 (-) True LOC118964915
XM_036979661.1 mRNA downstream 73962 22791807 ~ 22793761 (-) True LOC110525531
XM_021605690.2 mRNA downstream 90258 22775999 ~ 22777465 (-) False LOC110525517
XM_021605694.2 mRNA upstream 6573 22897262 ~ 22935152 (-) False LOC110525519
XM_021605695.2 mRNA upstream 6573 22897262 ~ 22935152 (-) True LOC110525519
XM_021605711.2 mRNA upstream 101784 22992473 ~ 22997931 (-) False anapc7
XM_036979658.1 mRNA upstream 101784 22992473 ~ 22998067 (-) False anapc7
XM_036979659.1 mRNA upstream 102736 22993425 ~ 22997946 (-) True anapc7
TU553165 other downstream 27157 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 586697 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 604370 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 1033363 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1433004 21431930 ~ 21434719 (-) True G484895
TU553428 other upstream 360597 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 494845 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 499328 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 692347 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 692347 23583036 ~ 23585554 (-) True LOC110525180

Expression Profile