RNA id: XM_021605695.2


Basic Information

Item Value
RNA id XM_021605695.2
length 6208
RNA type mRNA
GC content 0.47
exon number 24
gene id LOC110525519
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22897262 ~ 22935152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcACCAACTCAATAAAGAAAATGACCAAAACACAGTAACCGTAGCTAGTGTGCGATCCGACGAAGTGTATCTAATGTCTAGTGGGTGTAAGGTTAACGAGAGAACATTAAAACTAACTTTCAATCGGGTGCAGGATAACGAATTACCGGTATCTGAACTGGCTCGTTTTGAAAACAGGCCTCATGTCATTCTCACTGGTGCCCGTAAACACTCAATCTGACTATAATATAATGGTGCATGATAAGTAGACATTTTTTTTTGCATGAGTCTTGTGAAAAAATGTATTCAGTCAGTGGAGTGTGGAAATAGCTTTTAATGGCCATTATAAGTTATGCTTTAGAAATTATTTTGATTGGAAACGTatcatatagtttagtagaaactTAGTTTATACTCAATTACTCTATTCTCCGTGGACTaggtaaaacaaaacaaactatggtTGAACCAGTAGGTTTTGTGGAGGCTTGGAAAGCCCAGTTCCCTGAGTCAGATGCCCCAAGCATGGAGCTGAAATCATTGGGGGATATTGAGCAGGAGCTGGAGAAATGCAAGTCATCTATCAGGCAGCTGGAGTTAGAGGAAAACAAAGAGCGCTTTCAGATGATCTACCTGCAGACGTTACTGGCCAAGGAGAGGAAGGCTTATGATGGGCAGAGATGGGGCATCAAGAGGATGTCCCTAATGAATATTGGAGACCAATCCAGTTTTTCAGACACCCAGACATCCCACTTAGATGAGGAGCCTACAGTGGAGGAGCAGCCGAGAGAGGCAGTCGACACAGGGAGCTATAAACAGTATCCAGAGGGAGAGGTAGATGGGGTGACTCCCTTCGCACAGAGGGGTGAGTTGTGCCCCCACATGCCTACTGTGTGTCCCCCAGACACAGACCTGGACAGGGACAGGGTGGGCATGAGCTCAGTAGCAGCACTGAGGTCCACCTTCGAGCGCATCAAGATAGCCAACTCTCACACAGCTGGAGATGGGAAGGGGgttggagggacagagagacccTTCTACGTGAACATGGAGTACCACCATGAGAGAGGCCTCGTGAAGGTCAATGACAGGAAAGTCTCAGATAAGATCAGCAGCCTGGGCTGCCAGGCCATGCAAATGGAGCGCAACAGGTCCATGCACTCACTGCCCGGGAACCTATCCACTGCTATGGGGGAGATCCGCAAATCTGTGCTCAGATGCAGGTCCACAGAGGGCGGCTGTGGCTACAATGGGCTGTATGATGACACAGAGGTGAACCCACATTTCCTCAAGGACAGTGTGATCCGTTCCAATGGGGGGAGACAGCCGGCAAACTGTCAACCCTACACCAGTGTGTATGTTGGGGGGTTAATggcagagggggaggggagggtcaTTCACATGAGGGACCACAGTGTGGAGGAAGACTCACGCCAAAACTGGCCAAGGCGCTCCTACTCACCTGGCAGTTTTTACGATGCTGGGGGCGGCTACACCCCAGACTGCAGCTCCAATGAGAACCTGACGTCCAGCGAGGAAGACTTCTCCTCTGGCCAGTCAAGTCACATGTCCCCAAGTCCTACCACCAATCACACGTACAGTCAGAAAAGTCATTCACCTTCCCAGATTTCCCAGCAGTCCTTTGACAGCAGCAGCCTGCCCTCCCCACTGTCTCAGAGACGTCTGAAGCAGGAAGTGTTGGTGTCCGAGGCCTCCATCGTGGGTGTCCGTAAAATAGGCCAGATCTGGCCCGGTGATGGGGACTCCACTACGTCCAGTAGGACCTCACATGACAACAGTCTCCATGGAGATCTGGTCCCCTACAGTGGGACCCCTCCTTCCTATGGCTATGACCTGGAGCAGGCGGAGGAGCACCAGCAGCACCATGACCTCCTGCCTTTCAGcacctcaccctcctcctcacctcgcCTCCGCTCCAAGAGCTGCAGCAGCcagcacacacactcctctggcTCCCTGGAGTCCACCCTGTCGacagagctggaTCAGGAGAAAGAGTTGGAGATGCGGAAGTGGGTTTTGTCAGGGATCCTGGCCAGTGAGGAGACATATCTCAGCCACCTGGGGGCTATCTTACTGCCCATGAAGCCTCTGAGGGCAGCGGCCACCACCTCCCAGCCGATGCTGACCATCCAGCAGATAGAGACCATCTTCTTCAAGGTGACGGAGCTCCATGAGATCCACAAGGACTTTTACGATGCCCTGCTACCCAGAGTTCAGGAGTGGTGCCACAACCAGTGTGTGGGCGATCTCTTCCAGAAACTGGCCAGCCAGCTAGGAGTGTACAGGGCCTTTGTGGATAACTATACGGTTGCTGTGGAGACTGCTGACAAGTGCTGCCAGGCCAACGTACAGTTTGCTGAAATATGTCAGAATCTTAAGGTCATAAGCACCAAGGAATGCAAAGACCAGGCAAAACATTCACTGGAAACTCTGCTCTATAAACCCGTGGACAGAGTCACCCGCAGCACCCTGGTTCTGCATgacCTGTTGAAACACACCCCCTCCAGCCACCCAGACTATCCACTGCTGCAGGATGCCCTGAGAATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACCCCACGCAGGCAGTCTATGACAGTGAAGAAGGGAGAGAACCGTCAGCTGCTGAGGGACTGCTTCATGGTGGAGCTGGTGGAGGGATCCAGAAAGCTTCGTCATGTCTTCCTCTTCACAGACTTACTTCTCTGTGCCAAGTTGAAGAAACAGACTGCAGGgaaagGCCAGCAGTATGACTGTAAGTGGTACATCCCACTGTCAGACCTCACCTTCCAGACCATCGAGGACTCGGAGGCCACGCCCATACCCCAGGTCCAGGACGAGGAGATTGACGCCATGAAGATCAGAATCTCACAGATCAAGAATGAGCTCCAGAgagagaagAGAACCACTAAAGGAGGGAAGGCGATAGAGCGTTTGAGGAAGAAGCTGTCGGAGCAGGAGTCTCTGCTGCTGCTCATGTCCCCCAGCATGGCCTTCAGAGTGGCCAACAGGAACGGCAAGGGCTTCACATTCCTCATCTCATCAGATTACGAACGTGCAGAGTGGAAGGACATAATCCGCGAGCAACAGAAGAAGTGTTTCAAAAGCTTCTCTCTGACCTCCCTGGAGCTGCAGATGCTCACCAACTCATGTGTGAAGCTTCAGACGGTCCATACTATACCAATGACCATGAATAAAGAAGaAGATGAATCGTCTGGATTCTACGGTTTTCTGAATGTCATTGTTCACTCTGCATCAGGCCTCCAACAGAGCTTGAatctctaCTGCACTCTGGAGGTGGACTCCTTTGGCTACTTTGTGAACAAAGCCAAGACACGAGTGTACAGAGACTCCACACAACCCAAGTGGAACGAGGAGTTTGAGATTGAGCTGGAAGGCTCTCAGACTCTGAGGCTGCTGTGTTATGAGAAGTGCTACAACAAAGCCAAGCAAAACAAGGAGGACGGAGAGAACACAGACAGGATCATGGCCAAAGGACAGATACAGCTGGATCCCCAGACCCTGCAAAGCAAAGACTGGCAAAGAACAGTCATCACCATGAACGGAATTGAGGTGAAGCTGTCAATGAAGTTCACCAGCAGAGAGTTCAGTCTAAAGAGAATGCCCTCGCGGAAACAGTCAGGCGTGTTTGGGGTGAAAATAAGTGTTGTAACCAAACGGGAGCGTTCTAAGGTGCCCCTTATCGTGAAGCAGTGTGTAGAGGAGATCGAGCGCCGGGGCATGGAGGAGGTGGGAATCTACCGGGTCTCAGGGGTGGCTACAGACATCCAGGCCCTAAAGGGTGCATTTGATGCCAACAATAAGGATGTGTCGGTGATGATGAGTGAGATGGATGTGAATGCAATTGCTGGAACGCTGAAGCTGTATTTCCGTGAGCTGCCGGAACCTCTTTTCACAGATGACCTGTACCCCAACTTCGCTGGAGGCATCGCCCTGTCAGACAGTGTGGCTAAGGAGAGCTGTATGCTGAACCTGCTGCTATCACTCCCAGAACCCAACCTGGTCACCTTCCTCTTTCTGCTGGACCACCTGAAGAGGATTGCTGATAATGAGAGCGTTAACAAGATGTCTTTCCACAACCTGGCCACGGTCTTTGGCCCCACCCTGCTCCGCCCCTCTGAGAAAGACAGCAAGATCCCAAGCAATGCCACACAGCCCATCACTATGAATGACAGCTGGTCACTGGAGGTTATGTCACAGGTACAGGTCCTACTGTATTTCCTTCAGCTTGAAGGTATCCCAACACCGGACAGCAAACGTCAAAGCATCCTTTTCTCCACTGAAGTATAGCGGGAGCATGGACATTTCCATATGAGGAAGAATTTGACAAAATTTTGCCTTCCATGGTAAACTGTTGGCTGTGACCAAGAATGGCTGCGGCAGGAGCTAATTAACAACTTTCTGTTCAAAGTGTTACCTGAACGTAACATTTTTAGTCGGTCCAAACTTAGCTCCAATTTGAGAAAGCTTAGGCATAACTTTAAATTATGTTTTTGCTTAACTTGTCTCATATGTTTATTCAACTAGAAGTAATAATTTTGGGCCAACTAAATAATTATTTTGGGCCAACTAAAAATGTTACGTTCACTGATTGAAAAGTTGAGTAAACTAAAAAAAAAGGCTCTGGAACCAGTTACTTAGTAATAATTAGTTGAAtccaaattttttttttactgtgtgcTGAGCAGCAATGGCTGGATTACAGCGCAGCTCCTCGAAATGGCCACCAGATGGAGTTAACAGCACATTCCAAACTAGAACTAATACTTCATTACCGTGACCAAAGCCATTCCAATATGATCAATGATCCTAATGTCATCCTTACCTTGTTGACATCAAACAAACGTCAAACACAAAGAAATCCATTGAATGTGGTCAGATCAAAGCACAGGCCATTCCTTTATATGATTTTCAAAGGTAATAATAGTTTAACCAGATGATGGAAGTGAGGCAAATTGTCAACTCCATGATGCAGCTGTTGCAAAAGAGAAAAACATTCTCTACTACAGTATATTGCACACTGATATTCTGATTCATTTGGGATCTTTAGATATTTATACTTTCATTGTCATTACCACATATTAGGTGTGCTGAGCACTTACAGATAGTGTgtcaaaatgtatttatgttaCTTATATCCGACAATCAGGTCATTTTAGAGGTACTGGTTATCCACTAATGAGCACAATTCTCAAAACCCGAAAGATACAGTAGTTAAAATCCTTATTATGGAGCTAATTCGTTAGGCCTGTTTCATTGTGGAATCATgtgccccccgcccccccccccccccctgttgaagCACATTGTAGGAAAACTGTATTCACCAGATGTTTATGCAAATGCTGTCTTTATTTTGTAAGGAATGTGAGATTGATCACACTTTTAAGTAGGTATATTTAACATGCAGGCATGTTGACTTAaatatgttttaaatgtttttctctTCAACTGCTGTCTATGTGATTTTTGAGTTAAGAGATTTCTGCCAGGTTATAAAAGTGGACCACAACCGTTTATCAGAGTTTTGTTATCTTATAAAGGTCCTACATTGGCCTTAAGCATTTCCTCTTTAGGATAATTTATATTTTGATCTGATTCACTTAGAGCTCATTAATCTGAAAACGCCATCCCTTTACAGGAGGAATTTAGTTTTTATTTCAGAAGGGTTAAAACCACAGACTGTTCAGTGTTGTCACGTGGAACTGAGACAGAAATAGCACTGAGCTAAGCTTtgtctctttattacattttagtGGTAGCCTACCCTACCCTGGTATTGATCCACTAATATTCAAATCTCCTGGGTAAGAAAACAAATATGGGCATTGTGAAGGGCACCATTGTCTTCTGTTGTGTTATTTTGTTTCTAGTAAAATGTATAATGGGGTTTACTGTTCTCTGCCTGGTGAGCTGTAACTTCGAAAGCTCTTGGAAAATGTATTTGTGCTGGCAAAGTGAAAATCATTCCAAATGTTTACAGATATCTGAATTGAGATGTTACGCAAGTTAAGATACCATTATAGCACATATGAAACTGTTAGGCTAACTGACTGTTTGTATGTAGCCTATCAGCAATCACTTAATTGACATCTCTTTTTCCTTCCAGACACTGTTGTAGTCATTATCCCAATCATTTATGTATATGTACAATAAAGAGTTGATTTCCATGTG

Function

GO: NA

KEGG:

id description
K08878 BCR1, BCR; breakpoint cluster region protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553170 lncRNA downstream 69537 22814253 ~ 22827725 (-) True G486721
TU553177 lncRNA downstream 115707 22780003 ~ 22781555 (-) True G486727
TU553140 lncRNA downstream 156056 22740944 ~ 22741206 (-) True G486692
TU553139 lncRNA downstream 157568 22739495 ~ 22739694 (-) True G486691
TU553133 lncRNA downstream 165366 22730938 ~ 22731896 (-) True LOC110525508
TU553279 lncRNA upstream 51762 22986914 ~ 22988291 (-) False G486817
TU553280 lncRNA upstream 52521 22987673 ~ 22988702 (-) True G486817
TU553277 lncRNA upstream 70982 23006134 ~ 23010715 (-) True G486815
TU553420 lncRNA upstream 277544 23212696 ~ 23214656 (-) True G486949
TU553423 lncRNA upstream 296965 23232117 ~ 23232587 (-) True G486952
XM_021605706.2 mRNA downstream 2239 22867723 ~ 22895023 (-) False LOC110525523
XM_036979649.1 mRNA downstream 2239 22867723 ~ 22895023 (-) False LOC110525523
XM_021605707.2 mRNA downstream 6573 22867723 ~ 22890689 (-) False LOC110525523
XR_005052037.1 mRNA downstream 6573 22867723 ~ 22890689 (-) False LOC110525523
XM_036979651.1 mRNA downstream 6573 22877345 ~ 22890689 (-) True LOC110525523
XM_021605711.2 mRNA upstream 57321 22992473 ~ 22997931 (-) False anapc7
XM_036979658.1 mRNA upstream 57321 22992473 ~ 22998067 (-) False anapc7
XM_036979659.1 mRNA upstream 58273 22993425 ~ 22997946 (-) True anapc7
XM_021605718.2 mRNA upstream 94610 23029762 ~ 23049796 (-) False LOC110525530
XM_021605719.2 mRNA upstream 94610 23029762 ~ 23049799 (-) True LOC110525530
TU553165 other downstream 56696 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 616236 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 633909 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 1062902 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1462543 21431930 ~ 21434719 (-) True G484895
TU553428 other upstream 316134 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 450382 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 454865 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 647884 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 647884 23583036 ~ 23585554 (-) True LOC110525180

Expression Profile