RNA id: XM_036979658.1


Basic Information

Item Value
RNA id XM_036979658.1
length 2259
RNA type mRNA
GC content 0.50
exon number 11
gene id anapc7
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22992473 ~ 22998067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatttattggataAATGTGGCAACACCTCTCTGCGAAAACCTTTTTGGGAGAACTGTTCTCACCATCCCAGAAGTACCAGCTGCTGGTTTATCATGCAGATGCCATCTTCCATGACAAGGAGTACCGTAATGCTGCTTGCAAGTACAACATGGCACTGCAGCAGAAGAAAGTGCTCAGCAAAACTTCTAAAGTGCGGCCATCTACAGGGGGAACTGCATCCTCCTTGCAGTCACAGAGTTTTCCCTCAGAGATTGAGGTCAAGTATAAGATTGCAGAGTGCTACACCATCCTGAAGCTGGATAAGGATGCAATTGCAGTGCTTGATGGGATTCCATCTAGACAGAGAACCCCAAAGATCAACATGATGCTGGCTAATCTGTACAGGAAGGCTGGACACGAACGCTCTGCTGTCACAAGCTACAAAGAGGTCCTGAGACAGTGTCCCTTGGCACTGGATGCCATCATTGgtctcctgtctctgtcagtGAAGGGAGCTGAGGTGGCGTCCATGACTATCGATGTGATCCAGAGTCTTCCCAACCTGGAGTGGCTCTCTGTGTGGATCAAATCCTATGCCTTCATACATGCAGGGGACAACCACAGAGCAATCAACTCCATCCGCTCCCTGGAGAAGAAGTCTCTAATGCGTGACAATGTGGACCTGCTGGTGAGCCTGGCAGATGTGTACTTCAGGGCAGGCGACACAAAGAACTCCATCCTGAAGTTTGAGCAGGCCCAGATGCTGGACCCTTATCTGATCAAAGGCATGGATGTATATGGCTACCTTATGGCACGTGAGGGGCACCTGGAGGATGTTGAGGTCCTGGGAGGAAGGCTGTTCAACATCTCAGACCAGCATGCAGAGCCCTGGGTCATATCTGGATGTCACAGCTTCTACAGTAAGCGCTACTCCCGGGCCCTCTACCTGGGTGCCAAGGCCATCCAGCTGAACAGCAACAGTGTGCAAGCCCTCCTCCTGAAAGGGGCAGCACTGAGGAACATGGGCCGAGTGCAGGAGGCCATCATCCACTTCAGAGAGTCCATGCGCCTGGCGCCCTGCCGTCTGGACTGCTATGAAGGTCTGATTGACTGTTACCTGGCATCCAATGGGATCCGAGAGGCAATGGGGATGGCCAATAACATCTATAAGACCCTGGGAGCGAATGCCCAGACTCTGACCATCCTGGCTACAGTCTGCCTGGAGGACCCTGTGACCCAGGAGAAGGCCAAAACCCTGCTGGACAAGGCGCTAGCTCAGAGGCCTGACTACACCAAGGCTGTGGTCAAGAAGGCAGAGCTGCTAAGTCGGGAACAGAAATACGAGGAAGGGATTGCTCTTCTCCGGAATGCCTTGGCCAATCAGAGTGACTGTGTGCTGCACAGGATGCTGGGGGATTTCTTGGTGGCGGTCAATGATTACCAAGAGGCTATGGACCAATACAGCATAGCACTTAGCCTGGACCCGAATGACCAGAAGTCTCTGGAAGGAATGCAgaagatggagaaggaggagagcCCTGCTGATGCCACTGTGGAGCTGGATGGAGATGACATGGAGGGCAGCGGGGAGGATGGAGAGCTGGAAGGCAGTGACAGTGAGGCAGCCCAGTGGGCAGACCAGGAGCAGTGGTTTGGCATGCAGTGACCCAGGCCCACTGCAGAGACGCTAGGTGCACAGCGGGGGGAATATGCCACACATGGGCATCATGGGTTCCTGATGTAATGCTCCAGTGGACTCTATATGTGTGTATTCAAGATACAGGTGTATAAAGCCCCATCTCAGGGTTATAGACATCATCATAGCAGCCCAAAATTATAACCTGCCATTCCACGTCTCCTTCCCTTTGCGATCACTGATTAGTTGGTAGGTGAAAATGAACGTTACTAACCTATTTCATACCCATCAGGGGTCCAAGAGTAAAGGAGATGAGGCTATTTAGGATTGTTGGGCCATGGCCCCGGAGTTTCCTTGTTTGTTGGGTTAACACAAGATAATCTGAAGCCAGTAATCATTGAAATTATTCAGTTTTTTTCTGTTTGTAATATTTGCATGTATTAACACATATTGGTGTGAAACTGGTGACATTCTTTCCCTTCTGAATAATCAGGTAACTTAAGACATGTGTGTCAATCATGGGGTCATTTAATTTGACACATTCTTTGCAAAGTAATGTTTTCCAATGCAGATGTTTAaccatgtggtgtgtgtgtaggagatATAAAATCATGACGTCTGGTCTCATGCCCTGACATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553280 lncRNA downstream 3771 22987673 ~ 22988702 (-) True G486817
TU553279 lncRNA downstream 4182 22986914 ~ 22988291 (-) False G486817
TU553170 lncRNA downstream 164748 22814253 ~ 22827725 (-) True G486721
TU553177 lncRNA downstream 210918 22780003 ~ 22781555 (-) True G486727
TU553140 lncRNA downstream 251267 22740944 ~ 22741206 (-) True G486692
TU553277 lncRNA upstream 8067 23006134 ~ 23010715 (-) True G486815
TU553420 lncRNA upstream 214629 23212696 ~ 23214656 (-) True G486949
TU553423 lncRNA upstream 234050 23232117 ~ 23232587 (-) True G486952
TU553426 lncRNA upstream 256802 23254869 ~ 23258106 (-) True G486953
TU553478 lncRNA upstream 352626 23350693 ~ 23351167 (-) True G487001
XM_021605694.2 mRNA downstream 57321 22897262 ~ 22935152 (-) False LOC110525519
XM_021605695.2 mRNA downstream 57321 22897262 ~ 22935152 (-) True LOC110525519
XM_036979649.1 mRNA downstream 97450 22867723 ~ 22895023 (-) False LOC110525523
XM_021605718.2 mRNA upstream 31695 23029762 ~ 23049796 (-) False LOC110525530
XM_021605719.2 mRNA upstream 31695 23029762 ~ 23049799 (-) True LOC110525530
XM_021605717.2 mRNA upstream 62964 23061031 ~ 23064135 (-) True LOC110525529
XM_036979640.1 mRNA upstream 225028 23223095 ~ 23315185 (-) True LOC110525124
XM_021605724.2 mRNA upstream 398957 23397024 ~ 23410695 (-) True LOC110525535
TU553165 other downstream 151907 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 711447 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 729120 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 1158113 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1557754 21431930 ~ 21434719 (-) True G484895
TU553428 other upstream 253219 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 387467 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 391950 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 584969 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 584969 23583036 ~ 23585554 (-) True LOC110525180

Expression Profile