RNA id: XM_021605717.2


Basic Information

Item Value
RNA id XM_021605717.2
length 1886
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110525529
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23061031 ~ 23064135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACACCTAGGAGGGTAGTTAATCTTAGGCCAGCACAGTAGATGGCAGCGGCCATCAAATCCACCCAGAAGGTTGTTCGGGCAGATTCCTCTGAAGTAGGAAAGTGGGTGTGGCTAGATCTGAGGGCATCGTTAACGGCTAATAGATAGGCTAACGTTTATTTTGTCCCGGTAGACGGCTAATATTAGGTGTTTTGTATAACACTAAGATGTTGAAGTAGTTAGCTAGGTATAATATAACTTTGTATGATAACCAAATAACAGGGTGTCATTTCTACACGTTCTTGGAACCAGCAATTTAGTGAAGCTAGCCAATCGTAGCCaccactagctaacgttagctaaccagCACTAGATTTGCAGCTCACTCAGCCATTTTTTCTACGTCGCCATGGCCGATGTTGACAAACTCAACATAGACAGTATCATCCAGCGTCTTTTAGAAGTCAGGGGAGCAAAGCCTGGTAAGAATGTGCAGCTGCAGGAGAACGAGATCCGAGGATTGTGCCTCAAGTCCAGGGAGATATTTCTCAGCCAACCTATCCTCCTTGAACTTGAAGCCCCCCTCAAGATCTGTGGTGACATCCATGGGCAATATTACGACCTATTGAGGCTGTTTGAGTATGGGGGCTTCCCTCCTGAGAGCAACTACCTATTTCTGGGAGACTATGTGGACAGGGGGAAGCAGTCTCTGGAGACCATCTGTTTGCTTCTGGCCTACAAAATCAAATACCCAGAGAACTTCTTCCTGCTGAGGGGAAACCATGAGTGCGCCTCCATCAACAGAATATATGGATTCTATGATGAGTGTAAAAGAAGGTACAACATCAAGCTCTGGAAAACATTTACAGATTGCTTTAACTGCCTCCCTATTGCTGCCATTGTTGATGAGAAGATCTTCTGTTGCCATGGAGGGTTGTCACCAGACCTCCAGTCCATGGAGCAGATCAGACGCGTCATGCGGCCCACCGACGTCCCCGACCAGGGCCTCCTGTGTGACCTGCTCTGGTCAGATCCAGACAAGGATGTCCTCGGCTGgggagagaatgacagaggaGTCTCATTTACTTTTGGTTCAGAGGTTGTGGCAAAGTTCCTGCACAAACATGATTTGGATCTGATCTGTCGCGCCCATCAGGTTGTTGAGGACGGCTATGAGTTCTTCGCCAAGCGACAGCTTGTGACTTTATTCTCAGCACCCAACTACTGCGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTGGATGAGACCCTCATGTGCTCTTTTCAGATTTTGAAGCCCGCTGAGAAGAAGAAGCCAAATGGCAGCCGTCCAGTCACACCCCCACGGAACATGGTCACCAAGCAAGGCAAGAAATAAGGTGGCATGAGTGGACTTATGTCCTGCTCTCTATTCTGCTTTTGTCTTTCGCGTCTGAAGGGTTGGTTGCCCTTTGTGCTGCCAATACTGAAAAGATATCCACTGCAACCTGATGAAagcaaaatgttttgttgttttgtccaCAAGGGTAAATGGATATGTCACCATGAAAACCTCAGGTGTTTTGCACTCCATTGCAACTAGTCTTTGCCACATATGACTGTTCAACCAGGAACAATGTAACAATATGGCTGATAATGCACAGAAATGCCTTGTTTGAAGCTGTGCAGAGTTGTTTCACAATTTTTTCATTTCATGTTTCATCAACTTCTGTCACCACCTGTTTCTCACTGTCAATGTCAATAATGCAATTAATGGTTCTTAAAACAACTATGGAAATATCACAAGACACTTAGTTGTTTATTTCTGTATAACTTTCTTTATCATAGAACATTGAATCTTCACTCTGCTCCTGCATCTTCACCATTTTTAAAACAAGTATTGTGCTGAATTAAATGAAGAAA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553277 lncRNA downstream 50316 23006134 ~ 23010715 (-) True G486815
TU553280 lncRNA downstream 72329 22987673 ~ 22988702 (-) True G486817
TU553279 lncRNA downstream 72740 22986914 ~ 22988291 (-) False G486817
TU553170 lncRNA downstream 233306 22814253 ~ 22827725 (-) True G486721
TU553177 lncRNA downstream 279476 22780003 ~ 22781555 (-) True G486727
TU553420 lncRNA upstream 148561 23212696 ~ 23214656 (-) True G486949
TU553423 lncRNA upstream 167982 23232117 ~ 23232587 (-) True G486952
TU553426 lncRNA upstream 190734 23254869 ~ 23258106 (-) True G486953
TU553478 lncRNA upstream 286558 23350693 ~ 23351167 (-) True G487001
TU553482 lncRNA upstream 291380 23355515 ~ 23355898 (-) True G487005
XM_021605719.2 mRNA downstream 11232 23029762 ~ 23049799 (-) True LOC110525530
XM_021605718.2 mRNA downstream 11235 23029762 ~ 23049796 (-) False LOC110525530
XM_036979658.1 mRNA downstream 62964 22992473 ~ 22998067 (-) False anapc7
XM_036979659.1 mRNA downstream 63085 22993425 ~ 22997946 (-) True anapc7
XM_021605711.2 mRNA downstream 63100 22992473 ~ 22997931 (-) False anapc7
XM_036979640.1 mRNA upstream 158960 23223095 ~ 23315185 (-) True LOC110525124
XM_021605724.2 mRNA upstream 332889 23397024 ~ 23410695 (-) True LOC110525535
XM_036979667.1 mRNA upstream 346921 23411056 ~ 23446557 (-) True LOC110525536
XM_036979668.1 mRNA upstream 395405 23459540 ~ 23467753 (-) False LOC110525537
XM_021605726.2 mRNA upstream 395405 23459540 ~ 23490066 (-) False LOC110525537
TU553165 other downstream 220465 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 780005 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 797678 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 1226671 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1626312 21431930 ~ 21434719 (-) True G484895
TU553428 other upstream 187151 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 321399 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 325882 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 518901 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 518901 23583036 ~ 23585554 (-) True LOC110525180

Expression Profile