RNA id: XM_036979640.1


Basic Information

Item Value
RNA id XM_036979640.1
length 9093
RNA type mRNA
GC content 0.49
exon number 39
gene id LOC110525124
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23223095 ~ 23315185 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgaagtgttgcaaggatcggaccaaaacgcagcgtgATTAGTGGCTACAACCCTCAGCTCTCTAGATAAGACGTGTCCTGCTCCCTTGAAACAAACTCTTATACACTAAATGCAGAGGACATTGAGATACAAAACACATGTCACAGATGGAACAGGAGATCTCTCTAGTCCAGAGTAAGATGTCTGATCTGGAGTCAGTACTGCAGCAGAAGGATGTGGAGCTGAAAGCCTCGGAGACACAGAGGACCATCCTGGAGCAAGACCTGGCTACCTACATCACAGAGTGTAACagtctGAAGCTTAGTCTGGAGCAGGCCCGTATGGAGGTTTCCCAGGAAGACGACAAGGCACTGCAGCTCCTCCACGGCATCCGGGAGCAGAGCAACAAGCTGCAGGAGATTAAAGAACAGGAGTATCATGCCCAGCTGGAGGAGATGCGCGTGGCCATCAGGCAGCTGGAGGAGGACCTGTCTGCGGCCCGTCGTCGTAGCGACCTGTATGAGTCGGAGCTGAAGGAGTCCCGTCAGACCAGCGAAGAGCTGAAGAGGAAAGCAGCAGACTGTCAACAAAGGATGCAGAAGGCCAAGGAGCAAGGAAAAACTGATACAGAGGAGCTTCTGTCAAAGCTGGAGAAGACCAATGCTGAACAGAAAGTGAAAATTGAGGATCTCCAAGATAAGCTTTCCAAGGCAGTGAAGGCGAGTAGGGAGACCACAGATCTCCTCTATAGTATCAGGGTGGCTAAGGAGCGCATGGAACATGAGCTGGAGATGCTTCAGACCAAGGAGGACTCCAGTGACAGCCTCCGGAGACGCCTAAGAGAGACAGAGgaTGGCAGGAGGACCCTGGAGAGCCAAGTGAAGAGGCTGGAGATAGTTGAGCGCAGGGAGAGTAAGCTGAAGGAGGACATGCAGAGCAAGGCCCAGCAGGTCCAGCAGATGACGGATCAAATCATGGACCTGGAGGAGAGTCTGCGTGAGAGCCAGTCCACAGCCCAACGCGTGGAGACCCACCTGGAGCACAAGGAGAAGCTTTATGAAGAGAAGATCAAGGTTCTGGAGAACCAGATGAAGGCAGGCATGGCAGATAAGGAGATGCTGGAATCCAGTCAGAGCAAGTATGAGGAGGAGGTCCAGGAGAAGTGCAGCATCATCAGTGAGCAGAAGGCGACCATAAACGCCATGGACTCAAAGATGGCCAGCCTGGAGCAGAGGATTACTGAGCTATCTGAGGCCAACAAACTGGCAGCCAACAGCAGCATCTACACCCAGAAGAACATGAAAGCCCAGGAGGAGATGATCTCGGAGCTGAGACAACAGAAGTTCTACCTGGAGTCTCAGGCTGGGAAACTAGAGGCCCAGAACGCCAAGCTGGAAGAGCACCTGGAGAAGatgagtcagcaggagcagagcAACAAGAGCCGAGTGCTGGAGCTGGAGAACAGgctgagagagATGGGCCTTGAGCATGAGGAGCAGAAGCTGGAGATCAAGCGTCAGGGGACGGAGCTGACTCTGTCGTTACAGGAGAGGGTTTCTCAGATCAGTGGGCTACAAGCAGCACGCCAATCCCTGGAAAGTCAGCTGCAGCAGGCCAAATCAGAGCTCGAGGACACCACCGCTGAggctgaggaggaaatctgtgttctTAGAGCCCACCGAGACGAGATCCAGCGCAAGTATGATGCCCTCAGAGACAGCTGTGCGGTGATCACAGACCTGGAGGAGCAGCTGACCCAGCTGACCCAGGAGAACTCTGAGCTGAACCGTCAGAACTTCTACCTGTCCAAGCAGCTGGACGAGGCCACGGACGAGACAGAGGACCGCCTGCATCTGGGTCAGGATGTGGACCGCCTCCGCCACGAGGTGGCTGACCGCGAGATGCACCTCAACAACCAAAAACAGAACATTGAGACACTGAAGACCACGTGCACCATGCTGGAGGAGCAGGTCCTGGAGCTGGAGACTCTGAATGATGAGCTGCTGGAGAAGGAGAGGCAATGGGATGCCTGGAGGGGAGCCCTGGAGGAAGAGAAGAACCAGGCTGAGAGGAGGACCAGGGAGATCCAGAGACTGCTGGACAACGAGAAGCagaacagGCTACGTGCTGACCTGCGCAACTCGGAGGCTCGTCAGTCTATTGAGCAGGCAGTGAAGGAGCACAAGGCTGAGATTCTGGCCCTGCAGGAGGCCCTCAAGGACCAGAAACTCAAAGCAGAGAGCCTCTCTGACACAcTGAATGACCTGGAGAAGAAGCATGCCATGCTGGAGATGAATACAAGGAGTCTGCAGCAGAAGCTGGAGACTGAGAGGGAGCAGAAGCAGAGGCTGCTGGATGACCAAGGAAACCTGCAGCAGCAGTTAGATGTTCAGAAGAGCCACATCTTCCGGCTAACCCAGGGGCTGCAGGATGCTGTGGACCAGACTGACCTGCTGAAGACTGAGAGGACTGACCTGGAGTACCAGCTGGAGAACATCCAGGCTGTGTACTCCCATGAGAAAGTGAAGTTGGAGGGGACCATCACCCAGCAATCCAAACTCATAGACTTCCTCCAGGCCAGGGTGGACCAGGGGGGCTCTAAGAAGAAAAAGGGTCTATTTGGGCGGCGCAGAGAGGACCTGCTGGCTGCCATGGCAGCCCAGGGCCAGTCCCAGGTGCCCCAGCAGGTATCCCCTGCACCCTCCATGAAGCCGGTGCCCCTGCAGTACAGTGACATGAAAGTGTCCCTGGACAAGGAGCGCTCCCGCTGCTCTGAGCTGGAGGATGCACTGCAGAAGATGAGACTGGAGCTGCGCTCCCTACGAGAGGAGGCGGTCCAGTACAAACCTGTGGACCATGGTGGTACCCCTGACACCCCTGCCACAACGCGGCAGCAGAAGATGTCTGCCGTGGTGAAGTCTCCTGAGCACCAGCAGGGCCCGAGCAACCTGCTGGCTACCTCGATCTCTGGCCGCAGGAAGGAGGCTGCCCCCCCAGAGGAGTACGGCCATCGCATGAaggacagtcagagagacagggaaagggggaggcagagggagagcgTTCACCACAACACCCCTCACCGCTTCACTGTGGGACTCAACATGAGGGCTGCCAAGTGTACTGTGTGTCTGGATACTGTGCACTTCGGTCGTCAGGCAGCCACCTGTATCGAATGTCACGCTTTGTGCCATCCAAAATGCTCCCGCTGTCTTCCTGCTGCGTGTGGCATGCCTGGGGACTGTGCCTTGCATATGGCTGAGGGGCTGTGCCGGGACAAAGGCAGTTCCCCTGGCCTGCAGCTCAAAGAGGCCAGTGGACATGTTCACCTGGAGGGGTGGATGAAGCAGCCCAGGAATGTGAAGCGTGGCCAGGGCTGGGAGAAGAAGTATGTGGTGCTGGATGGGACCAAGGTGACCATCTACGAAACAGAGCCCAGAGAAGAGTCAGTGAAGCCGTTGGAGGAGTTTGAGCTATGTCTGTCTGATGTAGACTTGATGGTGCATGGTGCTGTAGGTGCGTCTGAGCTGCCCAACACCGCCAAGTCAGacgTGCAGTATGTGCTAAAACTGGAGTCCCACCCCCACACCTCGTGCTGGCCCGGACAGACTCTGTACTTCATGGCTCCCAGTTTCCCAGATAAACAGCGCTGGGTGGCCGTGCTGGAGTCTGTGGTGGCAGGGGGGCGAGCATCCCGGGAGAAGGCTGAGGCAGATGCAAAACTGCTGGGGAACTCTCTGCTGAAGCTGGAGGGTGATGACAGACTTGACATCAACTGTACTCTCCCCCTCACAGACCAGATAGTGTTAGTGGGCTCTGAGGAGGGTCTGTACGCCCTGAATCTGATCAAGAACTCCCTGACCCACATCCCTGGCCTGGGCTCCGTCTTCCAGATCCACATCATGAAAGAACATGAAAAGCTGCTGATGATTGTTGGGGATGAGAGGGCGCTGTGTCTGGTGGAGATTAAAAAGGTGAAGCAGTCTCTGGCCCAGTCCCACCTGCCTGCCCAGTCTGAACTGGAACCATTTATCTTTGAGACGGTCAAGGGATGCCACCTCTTCTCTGCAGGCAGAATAGATAATGGGCCTTGTATCTGTGCTGCAATGCCGAACAAGATTACAATTCTGCGTTACAATGATAACCTCAACAAGTTCTGCATTCGCAAGGAGATAGAGACTCTGGAGCCCTGCAGCTGCCTCCACCTGACCAGCTACAGCATCATCATCGGCACCAACAAGTTCTATGAGGTTGAGATGAAGCAGTATGTTCTGGAGGAGTTCCTGGATAAGAAGGATGTGTCTCTGGCCTCGGCGGTGTTTGCTTCCTCCTGCCACAGCTTCCCCATCTCCATAATGCAGGTCACCAGCACTCTGCAGAAGGAGGAGTACCTGCTCTGCTTCCATGAGTTTGGAGTGTTTGTGGACGCATATGGACGAAGGAGCCGCACTGAAGAGATCAAATGGAGTCGTCTGCCCCTGGCCTTCGCTTACAGAGAGCCCTACCTGTTTGTGACATATTTTAACTCTTTGGATGTGATCGAGGTCCAGGGACATGCTGCTCTTGGCCCTCCAGTGCTAGCCCACCTGGACATCCCTAACCCCCGTTACCTGGGTCCAGCCATCTCTTCTGGGGCCATCTACCTGGCCTCCTCCTACCAGAACAAGCTGCGGGTCATCTGCTGCAAGGGCAACCTGGTCAGGGAGTCTGGGGAGTTGCAGAGGACCGGCTCTAGCCGCGGCAGCCCCAGTAAGAGAGGACCACCTACATACACAGAGCACATCTCCAAGCGTCTGGCCTCGGGCCCTAGCAGCCATGAGGGGCTTCACCGTGAGCCCAGCACACCACACCGCTTCCGGGAGGGCCGAACTGAGTTCCGGCGGGACAAGTCCCCGGCGCGCCCCCTGGACAGAGAGAAGTCCCCAGGCCCCAGACTGGACAGCCGCAGAGAGAGGTCCCCTGGGAGGTTTGACGACCGCCAACGTCTCCACTCTGGCTCTGACCGCCGCACACAGCTCACCCCTGTCAACAAGGTGTGGGACCAGTCATCTGTGTGAGTAACACAAGGAGAGGTTTAGGAGAGAGGAGCTGTGTGATCCTCTGTCCACATGGCTACACCATCTAAGGGTGACAAACCAGAAAACCCATCGCCTGTATATAGTGCAATCTGGATTCATATGCCAACACACTATTGCACTGGGGAAATGTCCTTTGACAATCTTGTCTTTTCTTATATGTGTATTCATTGCTATGGTCCTATGGCAGATAGTTGTTCAACAGAGCAGCATTAGCAGGGAACCCCTGTGGATCTAATGGGTCGAGGATATGAACCTTTATAAGTACTAAAATCAAAGTTGTAAATATTGTTCCAGTTTTTATAGCAAAAGGGAATAGTAGGCTGGTACAGCCAAGTCTATATTTTTTAAGGACGTATTTCTAATGATGTTGCAGGGAGAGAAATCTCATCTCAAAATCTCATCATCATCCCAGATGCAATACTGTAATTTTTGCTTTTCTCTGGACGGTCAATCATGCCAACATTTAATCACCCATGTACTGTACAAATAATATGGGTTCCGAGAAGGCAATACTCATGAGCTTTTCACTTTGTACTTGAGATTAAGGGCTCTAGTCAATCTGCATCGCAGAAATTCAgctttacagcgtgattgaaatttatAAGCAATGTTAGTGgtttagcggagactgcattcacggtaaacactgCATGTCGGCTCAATctgaaatgacctttacatttctatcatGGAATCTATAACACTTCAGCTTTAAagactgaatagagccctaactGTGCAGGATTCCAAATTCATTGTTTCTACATGACCAGTCTTCTTTTTGATTAAATGGACTTTGATATCTAATCGCATATGATTGTTTAATAACAGTTAGTCTTACCATACTAATGGACAAAATAAATGTTAAGTATATTTAATACAAGGAACACTTGTAGCCTAAGAAGAATAAGACGCCTATAAACTTAGTCTTTGATTTGAACCAGCAGGCAGTGGAGCTGCTTATTATGGTACAGATGTCCTGTTCTTACTTCTGTGCAGTGAACTAACTATGAAGTCCAGTAATCGTCAGGGTTCGTCACTATTAATCGCTTCTTTTTCAATTGATAAAATATGATATTTGTCACATCAGAAGAGCATGAGTCATTTAGAGCAGCAGTTGCTTTTTTTACCTTGATTTTTGCTTTGTGTTTCTGTCATGTAGTCACATGAATTTGTATTCAATAAGTATACATTGTTGCAAGACAACTAAAAGGTTTTTGTACATACATTAAAGATGATTGACCTACCCTGGCAATGTGTCAAGATATGTACCATACATCTTACATATTTTCATTTTGCATGAGAAACTATTCCGGCTAGCAAATAACACATGGAAATAGCCCACTTTATTTTCCTTTATTTCTACATCAATGTAATGCTCTTTAAAGTaaattcaacaaaacaaaaataaacatacTAAACAAAAAGAGCACTTGTTGTTACAAGAAACTGCTATGTCCTGTTACAGGAAACGGCTACAAAGTCCTCTGCGACCGACGATACATGAGAAGGATGAAAGTGCTTGTTAAAGATAACTGTAAAGGAGGAAAACAAATCAAAAGCACATTAGTTATCCCTTTattacacaggaggttggtggcaacttaattggggaggacgggctcatggtaatagCTGGAGCGGGAATAGTATCAAATAgattaaacacatggtttccatgtatttgatgccattccatttgcgctGGTcgggccattattatgagccgtctctCAGCAGACTCCACTGCTTTGTTAAAGACCTGTATAAGAACTGCTTGGCACCAGTTTCCCTCTGACACACACGCTCAGAAACACTTGCATTTACACCGGATTCCTGGGCCATTGCAGGGATGCCTCCTATGGGGAACTACGTGGTGGACAGCTTCTTAAATCACACGAGGGAAGAGAAATGAAAGCCCAAGAATATCAAAATAACTCAAACCCAACTGGACAAAGTGTAGGGGCTCCTCCAGACAGACAAAGTGTAGGGGCTCCTCCAGACAGACAAAGTGTAGGGGCTCCTCCAGACAGACAATGTGTAGGGGCTCCTCCAGACAGAAAGTGTAGGGGCTCCTCCAGACAGACAATGTAAATCCTCCACATACTCATCATATCCAGCTATGTCCCACAACAGCACCAAAAGAAAAACAGGCTCATCCCTCATGGGAGTCCTTCTGTGGGTGACATAATACTGACTCATTTTCAGCTTTATTGTTTGATGTATTTCTGTAGCAGTGTCTACTTTAACTGAAATGCTATGCAAAACAACGAATGGTGAAACTGCCCTACAAGCCTCTAGCCTCGCCATGCCAGAGTGCAACAGGGACACTAATGGAAGCCAGAAGGAAATGAGTGTCTAAAGGAGCATTACTCTGAACCTAATTTAGCCCTCAATGTCAAACCTCAGTTTGGGAAAGTATGACCAGAAAGACCCACATGGCTTTGAGATCTGAAGCTATGGACTACTTAGTCCAGCCATTGAAATGTACACAGTATAAGCTATTCAGGGGGTCATTGAAAGAGATCAACAGTCAAGAGTTTGGTCTAAGCCCTCAGATGGTTTACAAGATGGCTGTCCAAACTATACATGGCTCTTTCACACAGTCTGCTGATCAGGTAGAGAGTTGTGAATAATAACAATTGCTGAAATCCCGTGATTCATTTGTGTCCTGCTAGTACGACAAGTGGCATTATTAATGATTGGCAGTCTTGAAGGATATCATTTTGGACATCGTATAGGGTTGTATTTGTACATTTAATGCTCGTAAAACCCAAAAATCATTAATAACAAAAAGGCCAATATTGATGGCGAACAACTGAAAAGCAAATATCAACTACTACAAGCACAGTGAGAATATCTGTGTGCATGTACGAGTGTGTGGAGCTCCTGTCTGTATGGTAGAGGTAGtgtgtacatgtactgtatatgagtGGGGTATGCGTGACCGTATGTGAGTGGGAGGTGGGGGTATAGTATTAGGTTGTTGTTTCGGACCACCATTCTGTCAGTGCATGGGAATCTCACCGATTTGGGCCATCTTTTCTCACGGCCCTTCAGATCCACTACTGATAAACACGGATTATCCTGTGGCAATGTAATTGTCTAAATTTGAGACAGCAATTCAAGAATACAACATCAATAAATAATGAAAACAGGTACTGATCGCAATCAAATGGAAAACCACTGCAGCATCAAAACAGGAACATGCCCccttaaaaaaataaagattCCCGTTTCCAACAGGTTGAAATTATAGTTTTTTCCAGCAATCAGCAAAAAGATAGAAATGAAAAGGTTTATGGTGACTAATTTGGTAAGCCACTATAAAAGGATTCTTCTATACATCGTTTCTTAAACGCTATATACTTATCTGAATATATTATTTATGTTGCAAAAATGTATCTGAGAGGAGTTTATTGAAGAGAGATGAAATAAGTGACTTCTCAATTCAGCAGGAGAAAACCGAGCTAACCAGCTAAGAGAACAACACTGGATGTTCCACAGAGACAAGGTACTATACATTTCATCCCCTTGTACTATCCAGCACTTCCTCGGTTTATATAGGACATGACGCAATGGTGGTTGAGGATGTTCAAAGGGAAAGATTGTGATGCGTGTATGACTCAACTTCATATTTTAGGGCTGTTTCATTATGCTCAACTAATAGCAAGGAAGTTAGTTACTAAATAAGCAGTCAGTGTTGGGTAATAAATTCACCCATCCTGCAGATGAGGACACATTGGTAAATGAGTTCCTGTCATCACAGGAGGACACTGAGACAGTAACATGACTAAAGCACATCCTTTAGTGACCCCATGACAACCATTACACCACTTCCTATTAAACCCTGGTTGTGATGGATTGAACGTGATGTCATGTCCAAGTGCCTGCTGGGTAAATTGGGGGGGGGGTCATCCTAATTTGAAGTGATGGGTAAATGAATGCATTTCCACAGCCTCTCCTCAAGTTTATTTAGGTCTCTGAAAACAAGTGACAATGCCAAATTAAATTtatgccgtgttcaaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553420 lncRNA downstream 8439 23212696 ~ 23214656 (-) True G486949
TU553277 lncRNA downstream 212380 23006134 ~ 23010715 (-) True G486815
TU553280 lncRNA downstream 234393 22987673 ~ 22988702 (-) True G486817
TU553279 lncRNA downstream 234804 22986914 ~ 22988291 (-) False G486817
TU553170 lncRNA downstream 395370 22814253 ~ 22827725 (-) True G486721
TU553478 lncRNA upstream 35508 23350693 ~ 23351167 (-) True G487001
TU553482 lncRNA upstream 40330 23355515 ~ 23355898 (-) True G487005
TU553485 lncRNA upstream 43994 23359179 ~ 23360028 (-) True G487008
TU553499 lncRNA upstream 62846 23378031 ~ 23378339 (-) True G487021
TU553501 lncRNA upstream 71096 23386281 ~ 23386649 (-) True G487023
XM_021605717.2 mRNA downstream 158960 23061031 ~ 23064135 (-) True LOC110525529
XM_021605719.2 mRNA downstream 173296 23029762 ~ 23049799 (-) True LOC110525530
XM_021605718.2 mRNA downstream 173299 23029762 ~ 23049796 (-) False LOC110525530
XM_036979658.1 mRNA downstream 225028 22992473 ~ 22998067 (-) False anapc7
XM_036979659.1 mRNA downstream 225149 22993425 ~ 22997946 (-) True anapc7
XM_021605724.2 mRNA upstream 81839 23397024 ~ 23410695 (-) True LOC110525535
XM_036979667.1 mRNA upstream 95871 23411056 ~ 23446557 (-) True LOC110525536
XM_036979668.1 mRNA upstream 144355 23459540 ~ 23467753 (-) False LOC110525537
XM_021605726.2 mRNA upstream 144355 23459540 ~ 23490066 (-) False LOC110525537
XM_021605728.2 mRNA upstream 144355 23459540 ~ 23490066 (-) False LOC110525537
TU553165 other downstream 382529 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 942069 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 959742 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 1388735 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1788376 21431930 ~ 21434719 (-) True G484895
TU553500 other upstream 70349 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 74832 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 267851 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 267851 23583036 ~ 23585554 (-) True LOC110525180
TU554111 other upstream 398690 23713875 ~ 23717783 (-) True LOC110525552

Expression Profile