RNA id: XM_021605728.2


Basic Information

Item Value
RNA id XM_021605728.2
length 5296
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110525537
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23459540 ~ 23490066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGTGCTCGTCGCTGTGCGGTCATGTATTGTACTTCCCAACCAACTTCAGCACAGTGAGTAAACTAATTGAGATTTTGAGAGGGATCACGGACATCGAAAAATATTTTAACTGGTGAAGCCAATTCTGGAAGTATGGACGATTTAGacGCTTTGTTGGCGGACCTGGAATCCACGACGTCCCACATCTCCAAGCATCCTGTGTTCCTGTCTGAGGAGACCCCCTACTCCTTCCCCACTGGAGGGAGCTCCTACCAGGATGTGTCAGTCCCTCCCCCGGTGCCACCCCCTCCCTCGGCTGAGGCTCTGAATGGCTCTGTGACAGACTCCCTGGACTCCCACCACTCCTCCCAACAGTCCTTGGGTTCAGCTCCGAAGAGCTTATGGTCCAGGGACAGTAGCAGCCCGCCCCTGTCCCACATTGAAGAGGACCACGTGTACAGtTTCCCCAACAAACAGAAGTCTGTTGAACAGTCTGCAGATACTATGAGCTCAGCTCTGGGCAGTAACCTGTCAGAGCTGGACAGGCTGCTCCTGGAGCTCAACGCTGTCCAGCAgaactctccctccttccccaccaCAGAGGAAACAGCCCCACCCCTGCCGTCATGCAGCATAACCCACTATGTGCAGGAGAACGGGGGTCCCCCTGACGTCATGGTGAGCCCTCCGTCTCAGGAGAAGACCAAACGGAACGGGAGGCAGGCGGTGGAGGAGGGCCGGCCCACTGTGGAGAGTCTGCTGGATGAGCTGGAGGGCTCTGTACCCACTCCCAGCCCCTCTGTCCTTCACAATGAGTTGGACTCTTCCTCTCAGCAGCAGGCCAGAATGTCAGCTTCCTGTGCCACACGTGAACTTGATGAGCTCATGGCCTCCCTTTCCGacttcaagCCTGTCCTCGGCTCCTTGGGGTCTATGAACTCTGACCTTCAGCTTGATCTGGCAGGAACCTCCCCCAGCATCATTCTGGAGGTCCATCCTCCTCCACGTACCTGCTCCTCCCTTGCTGCAGctgacccctcctccctctcaccctctcaacCTGCCTGTgactctcctcttttctctctaccTGCATGGGAGCTGCACATAGAGGAGGAAAGTGGGGACTCAGGGGGGGCAGTGTCCTCTCCACATCCCTTATTATCAAGCCCTCCCCCAGCTACTGTAACCTCCCTGAGCCCTCTGTCATTTGCAGAGAGTGACCCAGAACCAAAAGTTGTCATCGACGTCTCTGCGACCATCTTGTCGTCTTGTCAGAAGTCTCTGGTAGCCCTCAACCACTCCAACCCTTCACTTAGCACATACCCAAGTCCTCCTAATGCTGCTAAACCATCACTGAACTCAGCCAGTGTCACCCTGGACAATAACCCCTTAAAATCCCATAGTTCATTTCTAGAACTTGGTACAACTCCCCCTACTGTTACCAAGAGCACCAGTCCCCTGACTGACATGGATCTATGTTTCTCTACTCCAACCACTACCAAGAGTCCTGTTCCTGTCTCTACCTCCAAGACTCCTTCACCTCTCCATGCTTCTGTCACCAAGACTCATTCACCTCTCCATGCTTCTGTCACCAAAAGTCCTCCTCTCACTGCTTCTAAAGCCCCCTCACCATCTCTGGTCGCTTCTCCcaagtctccctctcccccagctCTCACCAGCCCCAAGATCTCCAGGAGAGTTCTGGagccagtccctgcagctgagcCCTCTCTGGATGAAGCCCTGGATAAGCTGCTGGCCATGAGTTTCACCAAGATGGAGAACGATAGAGTCCCTACTGACACACTGCAGCTGAAGGGGGAGGCACCTCAGCTGAAGAGGGAAGTGGTGCAGGAGGTACATGAGGAGGTCATCATGCCCTTAGACAGAAGGGAGGTTCAGCCAGACACTACCGGGTGTACCCCGGATGGGGCAAGTACCCGTGAGGGGACAATTACCCGGGATGGGTCAGTAATGAGTGGACACATAGATGGGCACAGGGAGCTCATGGACTGGGCTGATGTGGAGCTGAACATGTGTCTCCAAGATGGACTGGATGGTAGTATGACTCCTTATACAGAGAGACCTTATACAGATGGGAGCATGACCCCGATGACTGAGGCCAGCTGGATGGATGAGTCCCTGGATGGCTCCTCCTGCCCTGGAACTCCTGATGCTGCCATGGACCTACCTCTGCTGCAGCCTGCCACCATGGACAGAGTCTCTGCATCTGGACATCTTAAGTCTGTGATAAGGCGCACCAAGGAGACCCCCAATGTGCACCCCATGTACCGAGAGGGTCACCCCCGGAGGGGGCGGATGGGCCCCATCATCGTCAACAAGAGCAGCTCACAGGACCGCCTCATAGAGGAGCTGCAGGGGAAGCTGGGGATTGGCCGATTGGCTGACCGCCGGCGCAAGCAGCCGGACGATTGGCTCACTGAGGGCGTTATCGTCATGTCCAAGCCACAGCGTTTCCGTGGCGATGGGGCTGCGAATGAGGTGGACAAGATCATGGCCCAGGGGAAAGGTGGCCCTGGAGGCCCCCCAACACAGGTCAACAAACTGGACAACATGCTTGGCAGTCTGCAGTCTGACCTCCATAAACTGGGTGTGCAGACTGTGGCCAAGGGAGTGTGTGGGGCATGTTGTAAACCCATCGTGGGACAGGTGGTTACTGCCATGGGGCGCACATGGCACCCAGAGCACTTTGTGTGTACCCACTGTCAGGAGGAGATAGGTTCCAGAAACTTCTTTGAGCGTGACGGAGCGCCCTACTGTGAGATGGACTACCACAACCTGTTCTCCCCACGCTGCCACTACTGTAATGGCCCTATACTGGATAAAGTTGTGACCGCGTTGGACAAGACATGGCATCCTGAACACTTCTTCTGTGCTCAGTGTGGATCATTCTTTGGCCCAGAAGGCTTCCATGAGAAGGATGGGAAGGCGTACTGTAGGAAGGACTACTTTGACATGTTTGCACCGAAATGTGGCGGCTGTGCCCGAGCCATTCTGGAGAACTACATCTCTGCGCTAAACTCCCTTTGGCATCCAGAGTGCTTTGTCTGCAGGGAGTGCTTCACCCCATTTGTGAATGGGAGTTTCTTTGAGCATGATGGGCAGCCCTACTGTGAGGTGCACTACCACGAGCAGCGAGGCTCCCTCTGCTCGGGTTGTCAGAAGCCCATCACCGGCCGCTGCATCACAGCCATGGGCAGGAAGTTCCACCCGGAGCACTTTGTTTGTGCCTTCTGCCTCAAGCAGCTCAACAAGGGCACCTTCAAGGATCAGAACGACAAGCCCTACTGCCAGGGCTGCTTTGTGAAGCTATTCAGTTAGGGAGTGTGTGTGGCTCACAAGCTTGTATCAGAAAGTGTCTGTGTAGCTCTGGTAGTGTGTGCAAATCagattgtgtgtgtttgaattGTTTTAGAGGGATGTCTGTACACTGATGGTGTGTatggtgaaagtgtgtgtgtgtgtttcaggtagTATGTGTGTGAGATTCCAGCATTCTCTTTTTGGCCCTTGAAGTGTAATGGACAATCAGATCAGGTCTCTGCCTGTGCGCTCTCTGTGATGCTCAGAATAGTGTGATTTTAAACCCAAATAGTTTTGCTTTGCTTTTGTAGTCCGAGTAAATGCTTACTGAACACTGTAAGAACAAATGGGATACGTATATGGAAGTGTTTTGAGGTTGCTGCTCACTGGTTGAGTGTCTCTTGAAAACCATTTGAAATGTGTCATGTTACTAGATCAGGGAGATGTTGACCTgtcatttagttttttttttttatcagctgAGGCCTTTTTTCAACTGCTAAAGCAAAGGCCTCGGTGAGATTTCTTTAATTTGCTGTCTGAGTAACAGAGAACAGATGCATATAATGATGTCATTGTAGCTTTGACTGGAAATAGGCTGTGGGTCAGTCATTATTTTAGTACTTGTGAAGCACATGGTCGTGTCATCAGACCCTTGTGGACTAATTTTCACACACACGGCCTTGTGACACACAATCATTAACACCTCCACACAAGCATTTGGTGTTTGACAAACATACGAATGCTGACATGTTACAATTTAGATTTAATGTATATTGGAATGTTtctataaaatgtatgtgaaaaatatTAATTTACAACATATAATATTTGACTCCCTCTGTTTGGGAAATCGGAGTCACATATAACGCCAAATGGGGAGATGGATAATGTAGTTACTTTGTCACCTTCTCCACTGCCCACTCAGTTCTTTAGAGCTTAACCCTTAGTTGGACTGGTTTGGACTTTCCTTTATGTTCAGAAAGTGCTGATGCAGTATAAAAGAGTATGCCGCTATAAACAATTGAATTTATTCTGCTTCCAAGAAACGGTTGCATTTTACTGTGAGAATACTTTATACAAAGCGCTGGTCAGTTAATAGTTTGAATAACCACTCATTAAGAGAAATCCTCTTAGAAATTTCAAAGCAGATAtgcttttctatttttcaatatCTGTGAAGTTACTGTGCATTGAGTTTCACTTTTTGTAAAATAAATAGAATACTGCACAAGGCCCCTTATGTACGTACACAGATTCTATGCAAACAATACTGTGTGCAGCTGCAAACATTTAACTCAACAACCCTCTTGACTCTATCCAAGTGATGCTTTCAAGGAATAGGCCTATCTATTTTCTGTGCCAATATTTCAATGCAATGTATTTTACACTGGGGAGACCAGCAAGGAATCCTACTGTTTATAGACTGGGAGTCCTGGACTATCTCTTCAGATttctgtcagtgtgagtccactGGATAATGTGTGTTGATATTGGTCTGAGAGTGTGCACTGTGCAGGATCTACTGTACACCAGTTGTGTTTGTGGGCTTGTATTCTTATCCATCACATCATTGTATTGGGTCTGTATCTTGTTCAGGGATTTACACCCAGAGCTTGTAAATCTCTGTTCATTGTTTTATTTAAATCATTTAACTATTTGTCTACTCAGAATCATTGTAGTTGGCAGTTATTTAACCAAAGTAACTGTTTTTTATTGAAATTGTGTCCCTTGTCACCTTTTCATTTGATATGTCATAGTGCTGAATACTGAGCCAACTCATTTCATGGgaagatttttgttgttgtatagcCTAAGTGTATAGTATTTGTGATAAAGTTTTCCTTTGGTGGTGAAAAAAAGGCAATTTTGCCTATTTATCTGGGAATGGATTCTGCACACTCTAGAGATGATTGCCACCGTGGTGAAATCTAGAGTAGACTGTGATGGCATTATGTTTGTAAGAATGGTGGGGTAAAACATTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553515 lncRNA downstream 27161 23430761 ~ 23432379 (-) True G487037
TU553495 lncRNA downstream 62836 23396381 ~ 23396704 (-) True G487017
TU553493 lncRNA downstream 65008 23393898 ~ 23394532 (-) True G487015
TU553492 lncRNA downstream 65931 23392966 ~ 23393609 (-) True G487014
TU553504 lncRNA downstream 70980 23388011 ~ 23388560 (-) True G487026
TU554006 lncRNA upstream 73741 23563807 ~ 23564491 (-) True G487474
TU554022 lncRNA upstream 74866 23564932 ~ 23565171 (-) True G487489
TU554024 lncRNA upstream 79984 23570050 ~ 23570275 (-) True G487491
TU554026 lncRNA upstream 82423 23572489 ~ 23572730 (-) True G487493
TU554028 lncRNA upstream 84321 23574387 ~ 23574635 (-) True G487495
XM_036979667.1 mRNA downstream 12983 23411056 ~ 23446557 (-) True LOC110525536
XM_021605724.2 mRNA downstream 48845 23397024 ~ 23410695 (-) True LOC110525535
XM_036979640.1 mRNA downstream 144355 23223095 ~ 23315185 (-) True LOC110525124
XM_021605717.2 mRNA downstream 395405 23061031 ~ 23064135 (-) True LOC110525529
XM_021605719.2 mRNA downstream 409741 23029762 ~ 23049799 (-) True LOC110525530
XR_002473768.2 mRNA upstream 468 23490534 ~ 23492753 (-) False LOC110525539
XR_005052042.1 mRNA upstream 468 23490534 ~ 23492753 (-) False LOC110525539
XR_005052040.1 mRNA upstream 468 23490534 ~ 23492810 (-) False LOC110525539
XR_005052041.1 mRNA upstream 468 23490534 ~ 23492812 (-) True LOC110525539
XM_021604977.2 mRNA upstream 4638 23494704 ~ 23497340 (-) True LOC110525016
TU553494 other downstream 67478 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 73633 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 206179 23251286 ~ 23253361 (-) False G486953
TU553165 other downstream 618974 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 1178514 22280726 ~ 22281026 (-) True G485877
TU554033 other upstream 92970 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 92970 23583036 ~ 23585554 (-) True LOC110525180
TU554111 other upstream 223809 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 863467 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1170831 24660897 ~ 24674901 (-) False LOC110525585

Expression Profile