RNA id: XR_005052042.1


Basic Information

Item Value
RNA id XR_005052042.1
length 1946
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110525539
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23490534 ~ 23492812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAGCCGCTTTCAAAAAAAACTGGGAACGAGGTCAACTCATGACTTAAGTGACCGTTCAAATAGTTTTTTCCCAGTTTTTTTtttagttcccagttgttttgaacccACAGAAGTCAGAAGTCGAAGATTTACGAGTTCCCAGTTTCCATTAGTTTTTAACgcgacatttaaaaaaacaagtttaGACATGGCATAAAAACACGAGCTCAAGGATCGAGCACCGCTAGAGGCGAGACTTTCAATTTGAGTTTTCAGCAGCGGTTAACAAACTCTCCTGTCCTCCACAGTCAAGATGCCAGTCATTTGTAGCAGCTGTGCTGAGAAGAGTGCAGTGCTGAAACGTCCAAAGACGGCCCATTCCTTGTGCAAAGAGTGCCTCTTCTGGGCCTTTGAGGAGGAGGTGTATCAGACAATAATATCAGCGCAGCTCTTCAAAGATGGAGAGACTGGGCATTGGTGCCTCTGGCGGGAAGGATTCCACTGTGCTGGCCACCTCAGTAAACAATGCTcttctgctcttttctgtccATAAAAAACAAATGGATTGGTGGAAGAGGCACACCTCATGAAGGTCTTAAATGAGCGCTATAACTATGGCCTGAAACTAATGCTGCTCTCAGTGGACGAGGGTATGACAGGTAACCGTGATGACTCCTTGGGGACTGAAGAGAACCAGCAGTAGTATGAACTACCTCTGAAGATTGTGTCCTATGAGGAGCTGTATGGCTGGACCATGGATGCCATAGTGAAGCAGATTGGACTGCAGAACAATTGCTCTTTCTGTAGAGTGTTCCCGAAGACAGGCGCTGGACAGGGGAGCCAGGATGCTGAAGGTTGATAAGATATGTGTAGGTAAAATATAAGGCAAATGTATTTGTTATTGATCAGGCTTATTTTATCTATCTTATTTCAGATGTGTAGCCTAGTTTAAACGGTCCTTAAACAGTCCTGTGGCTACATCTACAGCCAGGTGCTGTGTAAGTCCTGTGTTCTGCTGGAGGGCCTGTACCGTGACCTGCCTAGACTAGGAATCGGCAAGCACCACCCCCTCCACAGGAAGATCCTCTCACGCTCAGCAGCCACTGACCCAGGCACAGGAGAGGAAACTCAAGGCTGTGGACTTCTGAGAGGCGTATAGGCAGAACGTCTCAGGATCACCTCCACTGTTTCTGTGAAGTTACACCTTGAAATGAGTAACCGAAGATGCCTCAAAACCAGATGTGGAGTTGTTTTTAAGTTTTAGCTTGGAATTGAAGATGAGACCTCTAACAAAAGAGTAGCCAGCATTTCCCCTTTTCAGCCACTGAACAATGGGGAAGTGATAATGATTAAAAAGGTCCTCCTTGCAGTTGCTGGAATCTAAATTCAATTCACATGTGGCTGTATGGTCAGTTAATTATGTAACCTCTGACAGCTGATGATTGAAATACAAGTATTTTGTGTGGTATCTGTATAATAAAGCTATTCTACATTTGCATGGCCTCTTCTGATTTTAGTATGAACAATTCCTCAAGAGAATTCTTACAGGTTGGGATTACTGATAGGTGAGAATTGTCCattaattgaatgattagaatattccgccctgaaacatataattgtaAGGAATTGATTAGCATGTATAAAATCATAATCAAGAAATGTGTGgtcctagtcagaattagggtaaaacaatatgtctttatggtattataaacacagactgtctgagcattggtgccgacctgactagagaCTTGGGAGAGAACTGGTAGGACAAGGACAAGGTCTCTGTCTCTTTGCCtatctgtcggctgggtagtgagacagacagtgtgtgcgtaGCAGGACATGTGTGTGAGTAtggctgtgtgaatgtgtgggcttgagaagtcagtataaaatgaattgttttgtattcttgactttagAACGTTCCTGTGAATAAACATTTTTGACTATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553515 lncRNA downstream 58155 23430761 ~ 23432379 (-) True G487037
TU553495 lncRNA downstream 93830 23396381 ~ 23396704 (-) True G487017
TU553493 lncRNA downstream 96002 23393898 ~ 23394532 (-) True G487015
TU553492 lncRNA downstream 96925 23392966 ~ 23393609 (-) True G487014
TU553504 lncRNA downstream 101974 23388011 ~ 23388560 (-) True G487026
TU554006 lncRNA upstream 71054 23563807 ~ 23564491 (-) True G487474
TU554022 lncRNA upstream 72179 23564932 ~ 23565171 (-) True G487489
TU554024 lncRNA upstream 77297 23570050 ~ 23570275 (-) True G487491
TU554026 lncRNA upstream 79736 23572489 ~ 23572730 (-) True G487493
TU554028 lncRNA upstream 81634 23574387 ~ 23574635 (-) True G487495
XM_021605726.2 mRNA downstream 468 23459540 ~ 23490066 (-) False LOC110525537
XM_021605728.2 mRNA downstream 468 23459540 ~ 23490066 (-) False LOC110525537
XM_021605729.2 mRNA downstream 468 23459540 ~ 23490066 (-) False LOC110525537
XM_021605730.2 mRNA downstream 468 23459540 ~ 23490066 (-) True LOC110525537
XM_036979668.1 mRNA downstream 22781 23459540 ~ 23467753 (-) False LOC110525537
XM_021604977.2 mRNA upstream 1951 23494704 ~ 23497340 (-) True LOC110525016
XM_021604978.2 mRNA upstream 14620 23507373 ~ 23509516 (-) True LOC110525017
XM_036979671.1 mRNA upstream 17857 23510610 ~ 23548931 (-) False si:ch73-138n13.1
XM_036979672.1 mRNA upstream 17857 23510610 ~ 23549535 (-) False si:ch73-138n13.1
XM_036979669.1 mRNA upstream 17857 23510610 ~ 23550151 (-) False si:ch73-138n13.1
TU553494 other downstream 98472 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 104627 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 237173 23251286 ~ 23253361 (-) False G486953
TU553165 other downstream 649968 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 1209508 22280726 ~ 22281026 (-) True G485877
TU554033 other upstream 90283 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 90283 23583036 ~ 23585554 (-) True LOC110525180
TU554111 other upstream 221122 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 860780 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1168144 24660897 ~ 24674901 (-) False LOC110525585

Expression Profile