RNA id: XM_021604977.2


Basic Information

Item Value
RNA id XM_021604977.2
length 843
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110525016
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23494704 ~ 23497340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actggcacAGACAGGTACTGCTTCATCATCCTGTTCACTATGGCCACAGACCACCAGAACCCTGCATCCAAGCAGCAGCAGCCAGGCACCAGTGCTTTcaagTTGATCATCTATGAACAGGAGAACTTCCAGGGGCGTTGCCATGAGCTGACTGGTCCCTGTAACGACCTCCAGGAAGCAGGCGTGGAGAAAGTGGGCTCCATACTGGTGCTGTGTGGACCATGGGTGGGTTACGAGCAGGCTAACTGTAAAGGGGAACAGTATGTGTTTGAGAAGGGGGAGTATCCTCGCTGGGATTCCTGGACCAACAGCAGACGTAGCGACAACATCTTTGCATTCCGCCCCATTAAAGTGGACAGCCAGGAGCACAAGATTGTCCTTTATGAAAACCCCAGTTTCGCGGGGAAGAAGATCGAGATCATAGATGATGATGTCCCCAGCTTCCACTCACATGGATACCAAGAGAAGGTCACCTCTGTCAGAGTTCAGAGTGGCACTTGGGTGGGGTACCAGTATCCTGGCTACAGAGGCTATCAGTACCTGTTTGAGAAGGGGGAATACAAGGACTGTGCTGAGTTTGGTGCCCAGTTCCCTCAGATCCAGTCCGTCAGGCGCATCCGAGACATGCAGTGGCACCAGAGGGGAGCTTTTCACCCTGTCGCTGGCGCCAACTAAGCTTATATGACTCTTTCCTGCACCAAGCCCTGACCCCTACAATCCTGCTCCTTCCCatacccctctctccatcacctactCAAAATTGCATTTTGATGCCTATTGCCATTGTTTCAGTAGCACAATCCTTTAAAGTAAAATAATAAATCCTTGTTGCTTATCTTTCAA

Function

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553515 lncRNA downstream 62325 23430761 ~ 23432379 (-) True G487037
TU553495 lncRNA downstream 98000 23396381 ~ 23396704 (-) True G487017
TU553493 lncRNA downstream 100172 23393898 ~ 23394532 (-) True G487015
TU553492 lncRNA downstream 101095 23392966 ~ 23393609 (-) True G487014
TU553504 lncRNA downstream 106144 23388011 ~ 23388560 (-) True G487026
TU554006 lncRNA upstream 66467 23563807 ~ 23564491 (-) True G487474
TU554022 lncRNA upstream 67592 23564932 ~ 23565171 (-) True G487489
TU554024 lncRNA upstream 72710 23570050 ~ 23570275 (-) True G487491
TU554026 lncRNA upstream 75149 23572489 ~ 23572730 (-) True G487493
TU554028 lncRNA upstream 77047 23574387 ~ 23574635 (-) True G487495
XR_005052041.1 mRNA downstream 1892 23490534 ~ 23492812 (-) True LOC110525539
XR_005052040.1 mRNA downstream 1894 23490534 ~ 23492810 (-) False LOC110525539
XR_002473768.2 mRNA downstream 1951 23490534 ~ 23492753 (-) False LOC110525539
XR_005052042.1 mRNA downstream 1951 23490534 ~ 23492753 (-) False LOC110525539
XM_021605726.2 mRNA downstream 4638 23459540 ~ 23490066 (-) False LOC110525537
XM_021604978.2 mRNA upstream 10033 23507373 ~ 23509516 (-) True LOC110525017
XM_036979671.1 mRNA upstream 13270 23510610 ~ 23548931 (-) False si:ch73-138n13.1
XM_036979672.1 mRNA upstream 13270 23510610 ~ 23549535 (-) False si:ch73-138n13.1
XM_036979669.1 mRNA upstream 13270 23510610 ~ 23550151 (-) False si:ch73-138n13.1
XM_036979674.1 mRNA upstream 13270 23510610 ~ 23550151 (-) False si:ch73-138n13.1
TU553494 other downstream 102642 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 108797 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 241343 23251286 ~ 23253361 (-) False G486953
TU553165 other downstream 654138 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 1213678 22280726 ~ 22281026 (-) True G485877
TU554033 other upstream 85696 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 85696 23583036 ~ 23585554 (-) True LOC110525180
TU554111 other upstream 216535 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 856193 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1163557 24660897 ~ 24674901 (-) False LOC110525585

Expression Profile