RNA id: XM_036979673.1


Basic Information

Item Value
RNA id XM_036979673.1
length 7683
RNA type mRNA
GC content 0.52
exon number 14
gene id si:ch73-138n13.1
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23510610 ~ 23550153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCATATATCGAAGGAGATTCATTTACATCTCACCTGTCGCAGACCATGTCAGTGTAGTAATGAAAACTGTCCACATGGTGGGACACCATACTGTACCTACCAACTTGTAGCTAGCAGGCAGCCAGCCAACTACAGTATCAAAACAAATCCCTCACCTCTACTACCAAGTTGGAGTGAGCCAGGTGGCAAGGGTGTGCGGAGAGAAAAATCGATTGACTGAGGTTTGGTTGAAGAAAATTATTAGGTCCCTGGTGAAAGGTACGGATAAACACGACAGGTGGATGGATTTCTCAGTGAAGCACCTACTCCTTACTCCAGTGTGATATGACATCACTGAGTGGTTACCACAGAAACCAGGGCTCCACTGCAGAAGGTTGACAGCCAGTCAAGTGTTTTTCCACAGGGATGGCTGCACAAGTGGAGGTGCAGACTGGGGAAGTGGAAAGGATTGGTGTAGGGGGACGACTGCATCTCAGCCCTCTGTCTGACTCCAGCAACAAGAGCCTCACGGAGGGTCCCTCCAACACCCAGGCCTCCCTCATCATCACTCCAGAGCCTAGTAAGCCTGTCCCTACACCCAAACCACGGCTCACTCCCAAACCTTTCGCTGTGGAGAAAAACCCCACCATCCGGCCCATACTTGCGCCTAAGCCGAATACCAACCCCCGACCAGTGCCCACTCGCCCTACTTCTTACAAACCTGACTTACCCAGCACCCCAAAACTTCAGCAGCCGAATGTCACCAGCAAACACAGGCCAGGGCCGACCAACCCCAGCTGTCCTGCTCCTAACTCCTACAAACCCTCTCATAAGTTGAGCATGGGACAAACCACGAAGCCTGTAGCCCAGCCCTTCAAACCTGCCCCTCTTCTAACCCCTGGGGACCCCAGCAAACCAACTCCCTCCCAACCGGTGCAACGTCAGAAGCCAGCTGCGGCAGGCTTGTTCCACTCACGGGGCCCTAAGAAACCGCCTCCAGCAGAATGGTCCGGATCCACCAAACCGGAGAAGGAAAGGAACAGAACAGCATCCAGTATCAGAGCTGGGGCAGCCTCTATGACCAGAGCCAAGTCTATGGGCTTCCTCAGTCAGATAGGGCAAGatgaggaggaaaggaagggggATGAAGGGCCCAAGGTCACAGTTCAACTCCGATCCCAGTCTAGAGCCTCCAGGCCCAGACCTGTGTCGGCCATCTTCCTGCCCTCTCCCACTCAGGCTGAGTCGCCCACCCCAGCTACTCGCTGGGCAGTGAGACGTCCCCTCTCAGCCAACCTCACCTCCAAGTTTGAGTCCATTGGCCTGTCGCTGCACCACGGCCGACCTGCCAAGACCGACAGCAAGGAAAACACTCCAGGGGAACCGCTACGGAggacagagaagaagaagggagcagaggggaccAATGTTACACAACCGGCCCCAGACAGCAAGCCCTCAGCCcttgtaggagggagagagaagaaaacagaggaagaagaggaggaggatgatgagggaaAGGGTGGAGGCAGCATTAAGAGACGGATCAGTCTCTTGCTtgattcctcctcttcttcctctcctgtgGTTCCTCTCCGTGTTGCTGCCCAAAGACCAGGGTCTAACGCTCCAGTACAGCCCATCCAAGAGGCAGATGTAACATTGGATGGTGTTAAACAGCGAACCAGGAAGCTTACTGAAGATACTGTTTCACCACCAGCCCAGACCCCTGCTGTTAAACCACAGTTCAAGTCCCACCCTCTGCCCCCTGACCTGACCAAAAGGCTTGGCTCTGAGAGGTCCACAGATCTCGGCAGTCCCTCCCCCAATGAGGCGACAGACCGCCATGAGAGTGACACTGATCCTCAAAGGAGGGTGGAGGACTCCGTTTACACCTTCAGTGACCAAAAAAAGGTGGATGACGACATCAGAGGCATACAAGAGCAGCCCACCCAGACCACCTCTGACCCTTCAGCAGTACTGACTGAAGCAGGGCGATGGATGGAGAGCTGCCCCAGCAGTGGGGCACAGACGGTGCGAGCAGCCCTGTTTGAGAATGTGGTGGAGAGACACAGCGTGCTGGTGATGGAGGAGGATAGGGCACAGAGTGCCACAAAGGGCTGTCCCAAGAGAAGTGTGTCCCTCAAACTTGGGGATGGGGAGAACGACGGCAGCCTGGTCACCGCCACCTACCGCAAGCCTgtgtctccctccagtccacttCTTGTAGAGCACTTGTTTGACACTGTGCAGgcggtgggagagaggagagccgTTAGTGAGAGTGTCCCTTTGGCTCAGCTCGAGGACAAAGCCATGACCCTCCGTTCCAGGCGTTCTGAGGGGAATCGGTCAGCCAGGGCTGAGCCAGTggaggagaggcatgctcaggtCCAAGGAGTCCTCAGTTTGGCTCAAAGGAGAGCACCAGCCTCCCAACAGGAACAGGGACCACACTACCTGAGGGTTGGAGTTCTGCAGAAGTGGAATACCACTGAGATGGGTAGGGAGgcagaggtagagaaaggaagacaaagggaaaaggagagggagagaaaggaggatgagaaagagaggcagagggaagCGGAGAGGAGGATGCAAATGGATGTAGACAGGGAGAAGccgagagaacaggagagggagagagaggaagtggcaGCACCGAAGCGGTTGAAAATGCTGGAGGCAGATGAGCAGCCACCCAAGCCCAGGGCCACCTACTTTGCTCTGACTGGTCAGATCCAGGAAGCTGTATCCATTGGGGACGCGGAAACCGAGAGAGGGAACGTGGAAGTTCCCTTTGACAATTTCTCTATGAAGTCTGGACAATGGGGCTCTCAAGGGAAGGTCTTACAAGTACGAAGGAACCCCTCTCTAGATGAAGCTTTTGGAAAAAGCTCCCAAGGTCAACAACAAGAAGAACTGATGGAGCGGAATCAAAcacaggaaagggagagaggaacggcatgggacagacagacatggagggaggagCTGGGAATAGAAAAACAAAACCAAGTAGACCTTGAGAAAGTAAAAGagttggagagggagaaagaatggCAGAGGGAGAGCAAGGAGTTTGAGAGGGAAAAACGGACACAGCTggacatggagagacagaaacCGTTAGAATatgcaagaaagagagagaaggaaaagctaaaagaattagaaagagagagacacaatgaGTTGGAGAacgagagactgagtgagagacaaagagagctgGAAAGACAGCGATGGCACAAgctgcagagggagagacagatcgagttggagagacagaaagagtttgaaaaggagaggcagagacagttagacttagagagacagaaagagtttgaaaaggagaggcagagacagttagacttagagagacagaaagagtttgaaaaggagaggcagagacagttagacttagagagacagaaagagtttgaaaaggagaggcagagacagttagacttagagagacagaagaagttGGAGAGAAttaaggagatggagagaaagcaaATGTTTGAGTTTGAAAAACAGaagcagaatgagagagagaggcaacagcTTCTGGAGCTTGAAACGCAGAGACTAagagagaaaatggagagagaggagcaggagaagatgaGACAGCAAGCCATACAAcaggaggaagacagacagagagagttggaaagggaaagagtgcaagagttggagagagagaggcaacgcGATCTGGaaagacaaaaacagagagagttggagagagaggggcaacGCGATCTGGaaagacaaaaacagagagagttggagagagagagacaacacgaTCTGGaaagacaaaaacagagagagttggagagagagaggcaacgcGATCTGGaaagacaaaaacagagagagttggagagagagaggcaacgcGATTTGGaaagacaaaaacagagagagttggagagagagaggcaacgcGATCTGGAAAGACAAAAACAGAGTGAGttggagaggcagagacagaaacagttggaCTTTGAGAGACAGGAATTGGAAAACCAGAGGGATAGAAAAAgggagttagagacagagagacagaaggtagaagAACTGGAGAGAataaaggagatggagagaagacaaCTGTTTGAGTTTGAAAGACAGaagcagaatgagagagagagacaactgctTCATGATCTTGGAAAGCAGAGACTAAgggaaaagatggagagagatgagcagGAGAAGATGAGACAGGTAACCATACAAGAGGAGGCAGATAGACAGAGAATAATggaagggcagaggagagagaaccaggAGAGGGGGGTGCTGGACTCTTTACCTCTCAGACCTAAAATGTTGGATCTAGACTCTGGGTGCTGGTCTTTGGGTGACCTGCACTCCAGAGGCAGTCCCCACTCCCCTAGTGTCCGATGGAAGCAGCCCTCTCCCTGGGCAGATGACCACTACAGACCTGGTATCCTGGACATAGACTCATTCAGGTCCCAGACCGAGACACAACCCTTGCCCACTAGAGAGGTGTTCCCTGTTACTGGCATCCAGGGCTCAGACCCAGGTAATGGGGCGAGATCCCACCCCCACTCTCCAGAAAGGGTGGGGCGACCCAGTGCTGTGTGGGCCCCCTCTCAGCAGGAGCTGTGGGAGCAGAGGCTAAGCATCGACGAGGAATCAGTGGATAGGCCCATGGCTGGACCAGAGCCACCCAGGAAGCCTGCCAATAAACCCAGCCTGGAGCAGCTCCTCCACGGGCTGGAGGACAGGGCCACGGCCCCCATCCTGGTCCCAGAGAGACGCTGGTCTGGTATGCCCAGTGAACCATCCTTCCCCAGGAGAGAGACCCACAGCCCTGGGTCCCCCATGGAGCAGACCTGGTTCCCCCAGGACTCAGAGCCCCAGAGGCACAGGGTAGAggccagaggacagaggagatcTCAGGGCTCCCAGGAGCTGAACCGGATGAGGTCTCGCAGCGTGTCCCGTAGATCAGCCCCGTCTGACAGTGCTGTGGAGGGGAGCCTGTCCAGGATGAGGAGCAGGagtacacatagagagagaggtggacagagCTGGgagCAGTTGAAGCAGAATGTGGacggtgaggaggggaggggcaTGGACACACTGGTCCATGAGACGGACAGTCAGTACGGGACCTGGGAGACAGGACTGCACACTGATGAtagCCTGACTCCTGCCACGCCCACCTCAGACAGCTACCCCAGTCAGTCTCCTAGGAAACCCACTCCACTTTACACGCCAGGGGAACATGTCCACACCCCGCCCAGTGACCTCGACACTCCAGACGGCTTCTCTGCCCAGCCCGAGATACAACCACTCCCCTTCCCTGAGGCCTCCACCAGCCTACTGGACTCCAGTGCTCTGCGCTCCAGGGTGCAGTTGAGTAAGATGCGGGGGCCACGTTCACGCCCCTCCAGGGTCTCTCGTCAGACTGCTGCTCTGTCTGTACACCCAGAGGGACAGGCCACGCCTACTGAGGACTGGCGCTCTCGAGACTCTACAGACGACAAAGTGGAGTCTTCCAAGAAGGACTCAGACTCTGAGGAGCAGGCGAGAGGAGCAGACCCCCACTCTGCTGCTGCCTCCTCCCAGCCCCAGAGAGTCGCCCTCTTCCCTGGGATGGACCCGTCTGCCCTCATGGCCCAGCTCAAGAAGAGAAGCGACTCTGACAATCAGACAGAGGgaccctccacttctccctcccAGTTATCCCGTTCTCCTAAATCCCCCTTCCTTCCCCGGGCGTCCCGTGTGCTGCCCCCCTCCGGAGGGAAAGAAAATGGTGAAGCGGCCTCACCACAGTGGCTGAGAGAGCTGAAGTCCAAGAAGCGCTTGAGTTGCCTTAACTGAAGAATCTGGTGGAGAATCGGACAGTAGCCTTAACCTGAGACCCTGAGAAAATGGGAATTCTGCTGCTGACATTGTAATTCGTCATCTGTTTGTTTCttttctctgttctcttcctgccTGGCTCAAATCCATGTGCATGGTGCCTTCTTACAGACAACCTCGGTCTTATGGATGAAACGAGCAAGGGGCTGCTCTGCTCAGAGCGTCCAGTTCACTGCTTGCTCCTCCACCTCCTATGTCAGGGGGGTCTTTGCATAAAGCCACTTTACCCTCTCACATGACAGGGGAGACTacggaagggggggggggatcccaTTCTCTCCTGTCAGGTTGTGTTGTATTTCATTATTGGTTAACTTGTGGGACCACATGCCTCTTAACCTGGAAGTGCTTCAATAAGCTGGAGGACAGTATAGCACCTCCACAAGAcatctttttattttgttttCTCTTTTTAAATATCATTTTCAGGTTAGTCTATGTGTTAACTGTATCTGTCAGTGGAGGAGCGTTGGAaaatatttcagattttattttttgTCATGGATCATAGAGAACAAAACACTGCTGAACTAATGGGCAGCCAGGGTGTATTATGTGTTACTAATAAATATGGTATCTGTAATCATGAAATGTTATATTTGTATTGTTGCTCATTTGAAAGCTGAATCATAACATGTCAAGAGTGCTGGGTTTGTATGGAGAGCATTTAAAGCATCACTACAGCAGAGGCCCCCAACCCCATTCCTCTGAGCCACTCAGTGACTGATGTCATGAACTAACTGAGAATCTGTTGTGTTGACATCATGCAGTCCCTTTAAACTTATGGCTAAAGAGGAATGCTTTGTGTTCGCTTTTTTTTCAATCATGTCTGAATCTGTTTCTACTGGTGGAAAAGGGGAGGGGAAGGGTTAATCACAATGGAAATCTACCTCCATCTCAAttacatgcgcgcacacacacacacacgcacgcatgaaCACTAATCAGCCTGTTCTTCCTCCCTTCACCTCCACTTACCTCTTCAGTGAAAGATCAAATGATTGTGTGTGTAATACTGATGGATGAGTGAGTAAGGATTGCAAGGAAAATGTACATGTTACCAATGAGCCATACATTCAATGTGCACTTCCTGGTTTCTGTTTTACCAGCATGTCTGCAACACATCTCCCATTTAGCGACCTCACGTGCATTGTCCCATCATTGTTTGGAAAAGGATGTGCATGCACAGTCTCTGGTCCTTTTCATCATGCTTTACTCAGACACTTAACTGAATGGCCACACCAAGTAGCAGTGGTACGATCACAGTCTGGATATCATGGCTTCATCCACAACTGTAATGGTCCCATTGTGCACATGGTCGGTGCAGCGGTGTGGATGTATAGTGGAATGGTAGGAGTACGGCTTCCACTACCCCAGTGGTGAATGCAAGTGAAGTATATTGTTTTGAGATGAGGGTGGTAATTTACCCTTTTCTTCTGCATGTGACTTGGACTATTTGCACCAGTTGTTTTAGGGCTTGTTTGAGCTGACTTAGGCCATTCCCCTGACCATGTTAGCCATGCTCCACTGTCCCACTACTTCCACTACAGCACTGACCGCATTCCACATTTTTGTAGACAGACGTTGGAACGCTAATGCAAGTGAATGTTTTGAGGGAATTTTTAGAGTTGTCCCTTTGGTGTCTGTCCATGGCGTTTGACTTTGTCATTATTTTTTCTCTTTCTCGTTTTATTTGAAAGTAAAATGTATATTGCACTGTTGTAAGGCCGTTGTTCAAAAGTGTAAATTCTTAATAAAATGTACTGCGTTAAGCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553515 lncRNA downstream 78231 23430761 ~ 23432379 (-) True G487037
TU553495 lncRNA downstream 113906 23396381 ~ 23396704 (-) True G487017
TU553493 lncRNA downstream 116078 23393898 ~ 23394532 (-) True G487015
TU553492 lncRNA downstream 117001 23392966 ~ 23393609 (-) True G487014
TU553504 lncRNA downstream 122050 23388011 ~ 23388560 (-) True G487026
TU554006 lncRNA upstream 13654 23563807 ~ 23564491 (-) True G487474
TU554022 lncRNA upstream 14779 23564932 ~ 23565171 (-) True G487489
TU554024 lncRNA upstream 19897 23570050 ~ 23570275 (-) True G487491
TU554026 lncRNA upstream 22336 23572489 ~ 23572730 (-) True G487493
TU554028 lncRNA upstream 24234 23574387 ~ 23574635 (-) True G487495
XM_021604978.2 mRNA downstream 1094 23507373 ~ 23509516 (-) True LOC110525017
XM_021604977.2 mRNA downstream 13270 23494704 ~ 23497340 (-) True LOC110525016
XR_005052041.1 mRNA downstream 17798 23490534 ~ 23492812 (-) True LOC110525539
XR_005052040.1 mRNA downstream 17800 23490534 ~ 23492810 (-) False LOC110525539
XR_005052042.1 mRNA downstream 17857 23490534 ~ 23492753 (-) False LOC110525539
XM_021605737.2 mRNA upstream 138 23550291 ~ 23560802 (-) True LOC110525541
LOC110525180 mRNA upstream 31974 23582127 ~ 23587892 (-) False LOC110525180
XM_021605738.2 mRNA upstream 38077 23588230 ~ 23590352 (-) True LOC110525543
XM_021605743.2 mRNA upstream 56196 23606349 ~ 23607826 (-) True pla2g1b
XM_036979151.1 mRNA upstream 64714 23614867 ~ 23616981 (-) False aakb1
TU553494 other downstream 118548 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 124703 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 257249 23251286 ~ 23253361 (-) False G486953
TU553165 other downstream 670044 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 1229584 22280726 ~ 22281026 (-) True G485877
TU554033 other upstream 32883 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 32883 23583036 ~ 23585554 (-) True LOC110525180
TU554111 other upstream 163722 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 803380 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1110744 24660897 ~ 24674901 (-) False LOC110525585

Expression Profile