RNA id: XM_021605737.2


Basic Information

Item Value
RNA id XM_021605737.2
length 3836
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110525541
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23550291 ~ 23560802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGAACAACCACGCCGATCTCATCTGGGTCTTTATGGTTCCTGTTGCCATTATTAGGAGATCGTCCATGCGATCATATTTTTGGTGGAAAACTGCACAAGTGTCCGTTTGGACAGACCTTGGAGAACGGTCGACGCCTTGTTGGGGCCAAGTGTTTCCCAGAACGCTAAAAAGCAGAACTTTACGGGGTCTTGGCTCCGCTGTGTGAGCCTTCGTTTTCTCTTTCTACACCGCCTCCATTACTGAGACGCCCAAATTGTGTCTCTATTTTTCTATGGTTTGTTTTGTTGTCAATATGTCGCCGTGATGGAGTTTCTGTGTTTGACAGAAATGAATCAGGGCCTGACCCGCAGTCGCAACAACCCGGTCTCCTCTCCCTTTGCCCCATTTAATGCTAGAGCGCACGGTCGCTCTCTCCCTGGAGCTCGGCCTAAATACCTCTCACCGAAAGGAGACAACTATGGAGAAGAATCCAAACAGCAACAAGGTTCCGCCCCGTTCGAGTTCTACAGGCCCAGCAGCCGGCGAATCTAAACCGAAAACAGATGGTAAGAGTAATGGAAGCTCTAAGCGCTACAGCCGCAAGCGAGAGCCCTCCCTTCCCAAGAGTGACAGTTTCCCTGGCCCTCGTCGCACCAATTCACAGAAAAGCAAGAATTTTGACAAGAGGCCCACCCAGAGAGGTGAAGCCCGGCAGTATGGCATTACAGGTGGAGGAAGACGTGAAGAGGTAGCAGAGTGCCGCCGGGCCGAGTTCAGCCCGGCTCAGTTTGCTGGACCCAAAAAGATCAGTTTGAACCACTTGCTCAACTTCACGTTTGAGCCTCGTGGGGGCCATGGTGGCCTAGGAGGAGAGAAACACTCCTGCTGGGGCCGCCACAACAAGTGGGGCCACAAGCATAAGCCCTTCAACAAGGAGCTTTTCCTCCAGGCCAACTGCCAGTTTGTGGTGACTGATGACCAGGACTACAAGGCTCACTTCACTGACCCAGACACTCTTGTGAACTGGGACTGTGTGCAGCAAGTGCGCATCTACAGTCATGAGGTTCCCTCCTGCCCCATCTGCCTCTACCCCCCTGTAGCGGCCCATATCACCCGCTGTGGCCACATCTTCTGCTGGCCATGCATGCTGCACTACCTGTCTCTCAGTGACAAAAGCTGGTCCAAGTGCCCCATCTGTTATGAGTCTGTACACTCTGACGACCTCaaaagtgtggttgcgatggAGACCAGGCAGTATGCAGTTGGTGACCTCATCACCATGCGCCTAATGCGAAGGGAGAAGGGGGCTCTGGTGGCCATGCCCACCTCCCAGTGGGTGAAGGTGGAGGGGCCTATTTGCTTTGGAGATGTCCACCTGAGCCCGTACTCCAAGCTGCTGCTTGCCTCTCAAGAGCAGTTACTGGGCCTGGTGGCTGAGGAGAAGTTTGTTTTGCAGGCTCAGCTCACCCTGGAGGAGGATGCCACAGCCTGTTTCATCCAGAGCGCCTTGTGCAGTCTCCAGGAGCGAGAGGAGGCTCTGCTGAAGCACCAGAAGGCATGTACTAAGGACAACTTAGAACTGTCAAGTCTCACTCTGGCAGACCCCCTCTCCCCTGAGGAGGAAGTAGTGACAATCTTCAGCAGTACCAAGCCGGTGCTGCAATACTCCTCTGCATTTGATGATGAGGTAGCAGAGGTTCCAGAGGAGGACCCAGAGGATGCGCCTGGTGAGGAACCAAAGCTCCCGGAAGGACTCCTGGAGACAGTGCTGGAGGAGTCCACTGAGGCCTCTGGGGATGCAGCTCCAGAGCCCCAGCCTGCTGAGGAGAACCCTCCCAGCCAGGCTGAAACAATGCGCCCCCAAACCTCAGAGCATGGCCCATCCTATTACTTCTACCAAGCGGAGGACTGCCAGCAGATGTTTTTGCACCCAGTGAACGTGCGCTGTCTGCTGCGTGAGTACGGCAGCCTGGAGGCCAGCCCTCACACCATCACTGCCACTGTGGTGGAGATTGAGGGGCAGACTATCACAGAGGAGATTCGCCGTCGACACCGCTACCTGGCTCACCTGCCGCTCACCTGTGAGTTCAGCATCTGTGAGCTGGCCCTGCAGCCCCCCACCCTGTCCAAAGAGACCCTGGACAGCTTTGCAGATGACTTGGAGAAAAGAAAGCGTCTTAGACAAAAGAAAGCAAGGGATGAGAAGCGTAGGGAGAGGCGTATTGAGATGGAGGAGAACAAGAAGCAGGGGAAATATCCAGAGGTGCATATTGGGCTGGAGAATTTTCAGCAGTTCCCGGCATTTGGGTCACCACTTCACAATGGCAGTCCACCTGTGTACCCTGAATTTCTGTTAGCCCCTCCCTCATTCCTCAGCAGCAGCCCTGTCTCTGATGGGCTGATGTTCCCCAGTCTGAGTGGACACAGCCCTGTGCCCAGCGTGGGCAGTGTGGAGGATGACTCTAACTGCATGTCGTTCGCTCAGATGCTGAGAGATGGGAAAGCCAGGGTAGATGCTGGGCCATGGACCACCTCAAAGAAAGTGGCAGATAGtgatggagagagtgatggagagagtagCCGGGTCCCAGTTCCCAGCTTCCAGAACTCTTTCAGCCAGGCCTTCGAGGAGGCACTCCTGCAGCACCAAGGTCCAACTGCTCCAACCCAGCCGTTGGTCATCCCTGaggaaaagagagggaaaaagaagaagaaacagaagcTTCTATTCAGCACCTCCATGGTTCACACAAAGTAGACTACACTGAAGTTGAGACTTCTCCCTTTACCCTCACACTTTTTATTTGATCCATCTCCTGCTGTCACTCTTGTCATTTTTCCATGCAGCTTTATTTTAGAATTATAAGCAATGGAGATTTACGATAGTGCGAGCGTGCAAAGATTTTGTCAGACATACTTTGGGGTTAGACGGCTCAGTTTACCGTAGTAGGATCTACTTAAGGTTGATTAAAATGGAATAAGTTTAAGGGATGCATTTTATATTTGGGGTAGCAGTCAGCCAATGAACCCTTCAGATTTTCAATCCTGAGTCCGAACACTGTCAGCCATGAATTTGGTCTTCAAACAAATGTCTACTTAACTAACTATTAAAAGGCAGAAGCTGACGCACACCTCAAACACTTTTAGAGGTGCAGACTGAGCGTAAACTAAAAAAATAGGCGCACACTGTTTCCAAACATTTTAATGGGTATAGTAACCAGCATTGCTGAAACATTGGTTGGGAGTATAATTAGTGTGCCACTTTATTTTTATACTAAACTAACAAAATCCCTTCCATTGAAAGTTGTTATATTTGAGCTTCATGCTGAGATGGCCTGAACATAGCAGAACCTCTGTGCATGAGTCTGATTCTCTTAACAGTCTGGAGGGAATGCAAGGAATACAGTGTAGCTTGTATTAAAGAGGCTTGAaaacctgttgtgtgtgtgtgtggctggctgAGAAATGCGCTGTAGACCTTGTTTGATTTATTAGACCATGCATATTAATTTTCTTCTCTTTGTTCAGTTTTCCCCTTTTACCACAGGCATTTTGCTGTCCTTTTCCTCattttactttgaagaactagtgTGCGGTCCAATTTGTAACATTGTCTTTTTACCCCCTGGTTTCAATTCAGTATTGCAAATATAGTTTGTGTGAAGCTAGAGATTTGCATACTTTTGATTGCTTGCTATATGAGTGAAAAGGTGGGATTTAAAGACACTATGTACACTTAGAAGGCTATTTTATTTACCTTTTGATTATTTGGGGGCAAACATGAGTAAACATGAAATAGGCTTACATTAACTGGCCTGACATTGGAATGAATAAAGGGTTATGCTCAAGCAAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553515 lncRNA downstream 117912 23430761 ~ 23432379 (-) True G487037
TU553495 lncRNA downstream 153587 23396381 ~ 23396704 (-) True G487017
TU553493 lncRNA downstream 155759 23393898 ~ 23394532 (-) True G487015
TU553492 lncRNA downstream 156682 23392966 ~ 23393609 (-) True G487014
TU553504 lncRNA downstream 161731 23388011 ~ 23388560 (-) True G487026
TU554006 lncRNA upstream 3005 23563807 ~ 23564491 (-) True G487474
TU554022 lncRNA upstream 4130 23564932 ~ 23565171 (-) True G487489
TU554024 lncRNA upstream 9248 23570050 ~ 23570275 (-) True G487491
TU554026 lncRNA upstream 11687 23572489 ~ 23572730 (-) True G487493
TU554028 lncRNA upstream 13585 23574387 ~ 23574635 (-) True G487495
XM_036979673.1 mRNA downstream 138 23510610 ~ 23550153 (-) True si:ch73-138n13.1
XM_036979670.1 mRNA downstream 139 23510610 ~ 23550152 (-) False si:ch73-138n13.1
XM_036979669.1 mRNA downstream 140 23510610 ~ 23550151 (-) False si:ch73-138n13.1
XM_036979674.1 mRNA downstream 140 23510610 ~ 23550151 (-) False si:ch73-138n13.1
XM_036979672.1 mRNA downstream 756 23510610 ~ 23549535 (-) False si:ch73-138n13.1
LOC110525180 mRNA upstream 21325 23582127 ~ 23587892 (-) False LOC110525180
XM_021605738.2 mRNA upstream 27428 23588230 ~ 23590352 (-) True LOC110525543
XM_021605743.2 mRNA upstream 45547 23606349 ~ 23607826 (-) True pla2g1b
XM_036979151.1 mRNA upstream 54065 23614867 ~ 23616981 (-) False aakb1
XM_036979149.1 mRNA upstream 54065 23614867 ~ 23617331 (-) False aakb1
TU553494 other downstream 158229 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 164384 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 296930 23251286 ~ 23253361 (-) False G486953
TU553165 other downstream 709725 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 1269265 22280726 ~ 22281026 (-) True G485877
TU554033 other upstream 22234 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 22234 23583036 ~ 23585554 (-) True LOC110525180
TU554111 other upstream 153073 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 792731 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1100095 24660897 ~ 24674901 (-) False LOC110525585

Expression Profile