RNA id: LOC110525180


Basic Information

Item Value
RNA id LOC110525180
length 2675
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110525180
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23582127 ~ 23587892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTGTGAAACACTTTGGAGAAAATTCTGCAGCCCACAGGTTCAGCGGTGAGGAGTCTCGAGAGCCTGGCAGTCAGAGGATGGGGAATCCCGGAGATAAGGCGTTTAGGGTGAAGGAACGACAGGGGAGTTAAGTCCAGCAGGTTGCttgccccctgcctcccccttcccTGTGAGAACTCTACAGATGCCCCTTTGCTCCCCACGGCACTGTACCAGCACAGGGTGAGAGGGCTGGTACTGGCCCTACTGGTAGAGAGACAATTCCAAAGCGACACTGCAGCCACAGAGGAAGTGTATCTCAGAAGCCTGGCATCTTCGAAGGGACTGGAAGCACATCTGAGGACTACTGCTCCGGGGGCCTCTGGCCCTTAGGGACACTACACACTGACTGTATACAGAACATGCTCACAAGCAACCTGTCTGGTAGGCCAGGGGGAGCCCAGGACCGTTCTTTTGTGAGAGCCACATCGCTGCTCCACTCGCATTTCTCTCACACTGAAGCTCTGCAGGAGGCTATTGTCAGGAGTGCGGGTGCAGCTGTGTACGGGACCCGCAGTGTGGCCCAGGAGACGTACTTCCTGCAGCAAGGCAGAGCGGTGAGAAACTCTGGCATTCCCGACCACCAGGACAATGCTTTCTCTCTGCCTAGCAAGGCCCGACACAGGTTACTGAAGCACAGGGTTAACCTGCTCTGACTGACTGTGACAAGGAGTTCCACCAGAACCACTGTCTACTCAGTCACTTCTCTGAATATGCTTCTCTCTAAATTCATTTCAAACAATGAACTTACACTGAACATTTTTCTAAGATAAACACTGTGTAAAGAGTTTTAGGAAGTTAAACGATTTACAAGAACCTTGGTCAAGTCCTATACTGTTTTGTATTGATGTGCAGAGGACCATGATCTCTGTCAACACTGCAAAGGCATTTTGCACAATATATAATGAAATTCCAAACCAACACACCACATGAAATATGAGCTTATAGAGAGAGATGTTGTGTAACAAATATTCAATGTACAAACATCATGAAGACACCATGGCTGCCGGGTTTCCTAATCACTGTAATCCTTTTCATTTGGATAAAGATAATCAGCTACCCGTGAATCCTTCACCACCACCCACAATGTATTTACAAAAAGAGTTATTATGTTGTACCTAATGACATACCGTATGTAGGAAAAACGTATTGTATATAATTACAGATATCATGTCATATTGTTTGTGTAATATTCTGTCCTGAGAATGTACTCTTGGGTTTTCATTGTAGAGTTGATTTTGACCACCTCTGAAATCAAGCCAAAAGCCATTGAATACACTAAATGTGATACTCTCTGATTAATGGGGCACATGAATCATTTGCCAATAATATTCCGTAAGGTTCTTTACAAAGATTGACTATGtttgtaacaacaacaaaaataatgaaTGGCTGATTCTTAACACACAAAAAATGCCTTGGTCATAAGGCAAGCATTTTCCTTCCAAGcattgcaaatacattcattcaaATATGATTATTTAAACATATCCACTCTAAATTAACACCGATGTATGGACCTTGTCTTGTCTAAATGAGCTGCACATTGTACTCTAAACTACAGGGGCCATCGTGGTCCCTATAGTGCCATAACGATAGTAGTACTGTAGCAACAGGCACACAGCTCAAGCTAAGCATAAATACGGCGCCCACAGTACTTTACAAACCCTAAAGTACGAACACTGTTATCATGGTAATTATATTGCTTTGGGTGAAGGGGACGAACAATGCCTAAATGTACGTTTTCATGAAATGTAAGATAGCTGGACTGTCTACGTACGTAAATATATCAAAATAGAAAGTAACATCGGTTTCTGTTCCTAGTGTCCTGGAAATAAGTAGTCTCGAAAACCCAACCCTAAGCCGTAATCACTGTTGCCTATGGTTGGGTTTTCGAGACTATCAAATGAGACCTTTCTTGATGGTCCAAATATAGTGTAATTAGGGTCATTAGATACGCGGTAGCTGAATTTGAATGACTGGAGTCGGTGTTTTCGGAGTGCCTTATTATGCAAACTCATTTTATGGGTCAGTGGGGTGCAGATGGGTAGTTAGGGGCACGAACAAAACAGGGGGGTGGAGAAACAGAATTAAAATTCTAAGTGGCAGAATGCCCCATTGTCAGTGGAGGGGCATACCCTATAAACCACGCAGATAAGCGGTCTTTTTCAGATACACCGCACCACTGGACGGAGCTGGTACAACTACGGACCCATCACCATGGCTTCTACCACATGCTCTTGGATTGCCTTAATGTTCTTATCTGTGTCTACTAATTTCATTGGAGTACAGTGTCGCGCGGTGCAGGAGATACTGTCAAAGTCCTCCGCTTTTCAGGATGGTCCCAATACTTTACCCACAGATATCTTGAGACGATGGCGACGGGAGAGCGATGAGACGCAGCGGCAACATTGCGCAATGTTGTCAGCGCCTTGGATGGAAACCAGCGCGTACCCGATGGAATTGGCACTGCTACATCGTCTCCGGGTGCGTTCAATGGCCCAAGGAGGTTTACGGCGCACAGTCTTTCCTGAGCAACCACTATTTCATTTTGTCAGACGCGTCTATCATTGCTGCCAGTTAGGTTTTCATTGCCGAGGCGTCAAAGGGATTCAGGGCAGTATCAGTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554028 lncRNA downstream 7492 23574387 ~ 23574635 (-) True G487495
TU554026 lncRNA downstream 9397 23572489 ~ 23572730 (-) True G487493
TU554024 lncRNA downstream 11852 23570050 ~ 23570275 (-) True G487491
TU554022 lncRNA downstream 16956 23564932 ~ 23565171 (-) True G487489
TU554006 lncRNA downstream 17636 23563807 ~ 23564491 (-) True G487474
TU554042 lncRNA upstream 2772 23590664 ~ 23591057 (-) True G487501
TU554044 lncRNA upstream 6061 23593953 ~ 23594154 (-) True G487503
TU554045 lncRNA upstream 6813 23594705 ~ 23594983 (-) True G487504
TU554093 lncRNA upstream 86037 23673929 ~ 23674146 (-) True G487529
TU554106 lncRNA upstream 109326 23697218 ~ 23699515 (-) True G487538
XM_021605737.2 mRNA downstream 21325 23550291 ~ 23560802 (-) True LOC110525541
XM_036979673.1 mRNA downstream 31974 23510610 ~ 23550153 (-) True si:ch73-138n13.1
XM_036979670.1 mRNA downstream 31975 23510610 ~ 23550152 (-) False si:ch73-138n13.1
XM_036979669.1 mRNA downstream 31976 23510610 ~ 23550151 (-) False si:ch73-138n13.1
XM_036979674.1 mRNA downstream 31976 23510610 ~ 23550151 (-) False si:ch73-138n13.1
XM_021605738.2 mRNA upstream 338 23588230 ~ 23590352 (-) True LOC110525543
XM_021605743.2 mRNA upstream 18457 23606349 ~ 23607826 (-) True pla2g1b
XM_036979151.1 mRNA upstream 26975 23614867 ~ 23616981 (-) False aakb1
XM_036979149.1 mRNA upstream 26975 23614867 ~ 23617331 (-) False aakb1
XM_036979148.1 mRNA upstream 26975 23614867 ~ 23617385 (-) False aakb1
TU553494 other downstream 190065 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 196220 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 328766 23251286 ~ 23253361 (-) False G486953
TU553165 other downstream 741561 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 1301101 22280726 ~ 22281026 (-) True G485877
TU554111 other upstream 125983 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 765641 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1073005 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 1118679 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1518313 25106205 ~ 25106570 (-) True G489038

Expression Profile