RNA id: TU554039


Basic Information

Item Value
RNA id TU554039
length 1738
RNA type TUCP
GC content 0.45
exon number 4
gene id LOC110525180
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23582127 ~ 23587892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAGCCCACAGGTTCAGCGGTGAGGAGTCTCGAGAGCCTGGCAGTCAGAGGATGGGGAATCCCGGAGATAAGGCGTTTAGGGTGAAGGAACGACAGGGGAGTTAAGTCCAGCAGGTTGCttgccccctgcctcccccttcccTGTGAGAACTCTACAGATGCCCCTTTGCTCCCCACGGCACTGTACCAGCACAGGGTGAGAGGGCTGGTACTGGCCCTACTGGTAGAGAGACAATTCCAAAGCGACACTGCAGCCACAGAGGAAGTGTATCTCAGAAGCCTGGCATCTTCGAAGGGACTGGAAGCACATCTGAGGACTACTGCTCCGGGGGCCTCTGGCCCTTAGGGACACTACACACTGACTGTATACAGAACATGCTCACAAGCAACCTGTCTGGTAGGCCAGGGGGAGCCCAGGACCGTTCTTTTGTGAGAGCCACATCGCTGCTCCACTCGCATTTCTCTCACACTGAAGCTCTGCAGGAGGCTATTGTCAGGAGTGCGGGTGCAGCTGTGTACGGGACCCGCAGTGTGGCCCAGGAGACGTACTTCCTGCAGCAAGGCAGAGCGGTGAGAAACTCTGGCATTCCCGACCACCAGGACAATGCTTTCTCTCTGCCTAGCAAGGCCCGACACAGGTTACTGAAGCACAGGGTTAACCTGCTCTGACTGACTGTGACAAGGAGTTCCACCAGAACCACTGTCTACTCAGTCACTTCTCTGAATATGCTTCTCTCTAAATTCATTTCAAACAATGAACTTACACTGAACATTTTTCTAAGATAAACACTGTGTAAAGAGTTTTAGGAAGTTAAACGATTTACAAGAACCTTGGTCAAGTCCTATACTGTTTTGTATTGATGTGCAGAGGACCATGATCTCTGTCAACACTGCAAAGGCATTTTGCACAATATATAATGAAATTCCAAACCAACACACCACATGAAATATGAGCTTATAGAGAGAGATGTTGTGTAACAAATATTCAATGTACAAACATCATGAAGACACCATGGCTGCCGGGTTTCCTAATCACTGTAATCCTTTTCATTTGGATAAAGATAATCAGCTACCCGTGAATCCTTCACCACCACCCACAATGTATTTACAAAAAGAGTTATTATGTTGTACCTAATGACATACCGTATGTAGGAAAAACGTATTGTATATAATTACAGATATCATGTCATATTGTTTGTGTAATATTCTGTCCTGAGAATGTACTCTTGGGTTTTCATTGTAGAGTTGATTTTGACCACCTCTGAAATCAAGCCAAAAGCCATTGAATACACTAAATGTGATACTCTCTGATTAATGGGGCACATGAATCATTTGCCAATAATATTCCGTAAGGTTCTTTACAAAGATTGACTATGtttgtaacaacaacaaaaataatgaaTGGCTGATTCTTAACACACAAAAAATGCCTTGGTCATAAGGCAAGCATTTTCCTTCCAAGcattgcaaatacattcattcaaATATGATTATTTAAACATATCCACTCTAAATTAACACCGATGTATGGACCTTGTCTTGTCTAAATGAGCTGCACATTGTACTCTAAACTACAGGGGCCATCGTGGTCCCTATAGTGCCATAACGATAGTAGTACTGTAGCAACAGGCACACAGCTCAAGCTAAGCATAAATACGGCGCCCACAGTACTTTACAAACCCTAAAGTACGAACACTGTTATCATGGTAATTATATTGCTTTGGGTGAAGGGGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554028 lncRNA downstream 8401 23574387 ~ 23574635 (-) True G487495
TU554026 lncRNA downstream 10306 23572489 ~ 23572730 (-) True G487493
TU554024 lncRNA downstream 12761 23570050 ~ 23570275 (-) True G487491
TU554022 lncRNA downstream 17865 23564932 ~ 23565171 (-) True G487489
TU554006 lncRNA downstream 18545 23563807 ~ 23564491 (-) True G487474
TU554042 lncRNA upstream 5110 23590664 ~ 23591057 (-) True G487501
TU554044 lncRNA upstream 8399 23593953 ~ 23594154 (-) True G487503
TU554045 lncRNA upstream 9151 23594705 ~ 23594983 (-) True G487504
TU554093 lncRNA upstream 88375 23673929 ~ 23674146 (-) True G487529
TU554106 lncRNA upstream 111664 23697218 ~ 23699515 (-) True G487538
XM_021605737.2 mRNA downstream 22234 23550291 ~ 23560802 (-) True LOC110525541
XM_036979673.1 mRNA downstream 32883 23510610 ~ 23550153 (-) True si:ch73-138n13.1
XM_036979670.1 mRNA downstream 32884 23510610 ~ 23550152 (-) False si:ch73-138n13.1
XM_036979669.1 mRNA downstream 32885 23510610 ~ 23550151 (-) False si:ch73-138n13.1
XM_021605738.2 mRNA upstream 2676 23588230 ~ 23590352 (-) True LOC110525543
XM_021605743.2 mRNA upstream 20795 23606349 ~ 23607826 (-) True pla2g1b
XM_036979151.1 mRNA upstream 29313 23614867 ~ 23616981 (-) False aakb1
XM_036979149.1 mRNA upstream 29313 23614867 ~ 23617331 (-) False aakb1
XM_036979148.1 mRNA upstream 29313 23614867 ~ 23617385 (-) False aakb1
TU553494 other downstream 190974 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 197129 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 329675 23251286 ~ 23253361 (-) False G486953
TU553165 other downstream 742470 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 1302010 22280726 ~ 22281026 (-) True G485877
TU554111 other upstream 128321 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 767979 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1075343 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 1121017 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1520651 25106205 ~ 25106570 (-) True G489038

Expression Profile