RNA id: TCONS_00031992


Basic Information

Item Value
RNA id TCONS_00031992
length 3893
RNA type mRNA
GC content 0.45
exon number 26
gene id XLOC_016217
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12406713 ~ 12632761 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACATTCAAGAAGAGCAGCCGATGAGACAGCTCGCGCTTTGAGATGCTTTAGTGATTTTACCGGACCCATGGCTTCGCTTTACCAGAGATTCTCGGGGAAAATTAATACCAACAAATCTTTTCCCCATCCACCTGAAGCCAGTCATCTCCTGGGTGGACAGGTTCCCGAGGAGGAGAATAAATCTGGGAAGAGTCCTCATCACCCCTCATGCCGACCTCCGGTCCAGAACCGCAAGAAAAACGCTAGCGAGGATGAAGACgAGTTGGTTGGGGGTAGTGCTCCACAGAGAAACTGGAAAGGGATAGCCATTGCCCTGCTGGTCATCCTGGTCATCTGCTCTCTGATCGTCACCTCTGTCATCCTGCTAACACCCGTTGAAGATACCAGCCTGGCCTCCAAGCAGAAGGTCACAATCGAGGACATCTTCAGCGGCAAGCTCCAGGCACACAACCCTCAGGCAACGTGGCTCAGCGACACTGAACTGCTGTACCATGACCATGATGGcaatgtgaagatgctgaacATTCAGACGAATTACAACAAGACTCTGGTGGAGAACAAGACATTTGAGAGTTTCCACAGCCAGGAAGCCTACAGACCAACCCAATATCAAGTGTCTCCAGATCTAAAATATGTCCTGTTGGCCTACAATATCATGCCGATTTATCAGTATTCCTTCATGGCGTATTACATCATCTGCAGCCTTGATTCTCCAGAGAGAGTGGAACTGACCCCTAATGAGGTGCAGAGCACCGCACTGCAGTATGCCGGATGGGGTCCCAAAGGACAGCAGCTGaTTTTCATCTTTGAAAATAACATCTACTACAAAGCACAAGTCAACAGCCCATCAATCCGCCTGGTGTCCACAGGCAGTCTGGGGGTCATATTTAATGGACTTGCTGACTGGCTCTATGAAGAGGAGATTTTCCAGAATCACATTGCACACTGGTGGTCACCAGATGGTCTCAGACTGGCATATGCCACTATCAATGACACCCTGGTGCCTAAGATGGAGATACCCATGTTCACTAGTGTGCTGTATCCCAATGGACAAGAGTACCGCTACCCTAAAGCTGGGGAGGAAAACCCTGAGATCTATTTGTCAGTGGTGAGTCTGAACGGCCCCTTACACACAGTGAGGATGAAGAAACCAGAGGATCCCAGAATCAGgaaagaTTACTACATCACTATGGTGAAGTGGGCAACCAGCACCAAACTAGCAGTAAACTGGCTGAACCGAGCACAAAACAGCTCAATTCTGACCTTATGTGAGGCCACTACTGGCATCTGCACAAAGAAACATGAAGATGAGAGTGACAGCTGGCTTCACAGACAGAACGAACCCCCGCTGTTCTCCAAAGATGGCTACAGGTTCTTCTTTACCCGAGCTGTTCCACAGGGAGGTCGAGGGAAGTTCTTCCACATATCCATGTCCACCTCCCAGCCCAACAGCAGCACAGACACGCTTCAGTCCCTGACGTCAGGAGATTGGGATGTGACACAGATTTTAGCCTACAACGAGGACACCAGAATTGTATACTTTTTGAGCACAGAAGACGGTGCAAGTCGGCGTCAGCTTTACAGTGCTAACACCACAGGATCCTTCAACCGCCGCTGCCTTTCCTGTAATTTCCGTTGTGGCTACGTCAGTGGATCATTCAGTCCAGACGCAAACTACTTCTTTCTCAACTGCAAAgGTCCCGGTGTGCCTCACTCAGCCGTGTACAGCACCAGATATGGACAGTATGAGAAGATACTGGATGTGGAGACCAATGAGCTGTTGAACGTCACTGTGAACAACACACAGATGCCCATAGTGGAGTACAGAAATGTCAACATTGATGATTATGTTCTGAGCATGCAGATTCTGAAGCCAGCGGTGTTTGTGGCGACATCTCATTACCCCTTACTGCTGCTGGTGGATGGCACCCCCGGTGGTCAGATGGTAACAGAACAGTTCCAGGTGGACTGGAGCACTGTGCTGGTCAGCTCCTTCAACACCATAGTCGTGCGTTTGGATGGGCGCGGCAGTGGCTTTCAGGGCACAAACCTCCTTCATCGCGTCAAGAAGAAACTGGGGGAGTTTGAGGAGAGAGACCACCTGGAAGCTCTCAGAATTATGTCTCAGATGACGTACATCGACAACTCCAGAATTGGAGTTTATGGAAAGGCATATGGAGGGTATCTGGCCAGTCGACTCTTACACTTGGACGAATCTCCGAACCTgtctaaaatcaaaatcaagtgtggCACTGCCGTCTCCCCTATCACTGATTTCTCTATATACGCTTCTGCATTTTCTGAACGCTATTTAGGATTGCCGCAGATCAACAAGAGAGAGTACGAGatggCGCGTTTAACAGACCGCATGGAGCAACTGAGAGACAAGAAACTTATGATAATTCACCCTACAGCCGACGAGAAAGTCCATTTTCAGCACACGGccaaatttattaatcatttgatAAATGAGAAGGCTAATTATACATTACAGATCTACCCAGATGAAGGCCATTTCCTTAATTCGAAAGACTCGCAGCAGCATCTGAGTCAATCACTGGTCAACTTCTTCGTAGAATGTTTCACACCTCCAGAGATAATCCAGAGTGAAGAGAAACAGGACAACGAGGATGATGGTTAAATTCCTATCGACACCCAGTCTGCTTACAGCCCGATATGCAAACTCCTTTCCTCCATTATACAGTCATCCATTCTCATATTCATTCTGAGGACTTCTCCCGAGCCTCCGCATGGACCACACCCCTATCTCTGATTGGCTCATTGGCTTCAGGAAGGAGTTTGGGTTTGGAGAAAGACATGATGAACCATTGCGTACAGTGTGAGAGAACCTGCTGTGGTTTGGTCAAAGCACTGAGCTCGTGTTCTGTAATTCATGCACTGTTGAAAGAAAGCTTTAAGAGGTGATAGCACAATATAGGTCAGAATGATTGGCTAGAATTACTATTAGCTGCAGATAACTGAACTGTTTTCTCAACTTTTCCAGTGAGTTTCGATCCAATTATTACATTTTAGGCGCTTTATTTGGGTGTAAATGTTATTGTGAGCTCATTATTATCAGTCATCAGGCCTATTAATATTGGATAAATTCacataaaaacattcataaatgcattttGGGTCAGCTGAATGTGGCaatttatgtgaaaaaaaaaaaatatcaatgtaGCTGAACGTGCAAAGCATTCATCTAAAACTCCTGCTTGAGTACATCAGACATCCTACATCAAACAGCTGTTGTAATGATTCATAGCAACGCCCGCATGAAATCATTTGCGAATCAGAGTCTTAATTTTGATTTCCGACTTGAGTGCAGCTGCAAACGTCTTTGGATATTCATTTAGTCACTGTGCCTTAATGGAGTAAACCTGCTTAAGACAGGCAGTCCATGAGGTATGACAAATAATTTATGgacagattaaaataaataattttaaaaaatgttctaaAGTTTCATGTAATGTAAACCATGCCACAACCCTGCCAAGAACATTTTCTTCACAGTCCTGTGTATTAGTTAAGTTGTAAAGTAATACAGTAGATTAACTGTGAATACAGAACTCATAGGACTAGTGTTGGGGCAGGTTGGGTTTTTTTGTTTCATACAGTACGTGGTTAAGAAGATGTTAAAAGAGCTTTTGCATAGaatatattttcttgttatataaTTTGGCATGGTGGCAAGATGGTTTCCTTTGTTTCAATGTATCTATTTACGTGTACTTTTGACAGCTTGAATGTTCCAATGTGATTCCACTGAATTTATTGTTGTAAGTGAAATCCTGTCTTGTAAGCAGATGCACTGATGTGTAAATTTCAACTGTTTTGGTCCCTACTTGTGTGTACCTTGTACATAAAGCATTTTGAAAGCT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-88 Predicted to enable serine-type peptidase activity. Predicted to be involved in regulation of potassium ion transmembrane transport. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated potassium channel complex. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis; autosomal dominant non-syndromic intellectual disability 33; and spinal muscular atrophy. Orthologous to human DPP6 (dipeptidyl peptidase like 6).

Ensembl:

ensembl_id ENSDART00000037848

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031986 lncRNA downstream 425408 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00033352 lncRNA downstream 428119 11977036 ~ 11978594 (-) True XLOC_016213
TCONS_00031984 lncRNA downstream 639509 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00033779 lncRNA downstream 848589 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00031977 lncRNA downstream 1068730 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00033780 lncRNA upstream 71196 12703957 ~ 12704384 (-) True XLOC_016218
TCONS_00031994 lncRNA upstream 187238 12819999 ~ 12821531 (-) True XLOC_016219
TCONS_00033781 lncRNA upstream 551466 13184227 ~ 13189174 (-) False XLOC_016220
TCONS_00033782 lncRNA upstream 917806 13550567 ~ 13561727 (-) False XLOC_016224
TCONS_00033783 lncRNA upstream 917806 13550567 ~ 13573442 (-) False XLOC_016224
TCONS_00031989 mRNA downstream 163500 12104389 ~ 12243213 (-) False XLOC_016215
TCONS_00031990 mRNA downstream 164018 12154840 ~ 12242695 (-) True XLOC_016215
TCONS_00031987 mRNA downstream 326995 12019341 ~ 12079718 (-) False XLOC_016214
TCONS_00031988 mRNA downstream 355530 12039717 ~ 12051183 (-) True XLOC_016214
TCONS_00031985 mRNA downstream 494366 11848510 ~ 11912347 (-) True XLOC_016212
TCONS_00031995 mRNA upstream 552541 13185302 ~ 13216269 (-) True XLOC_016220
TCONS_00031996 mRNA upstream 590994 13223755 ~ 13254821 (-) False XLOC_016221
TCONS_00031997 mRNA upstream 592259 13225020 ~ 13254594 (-) False XLOC_016221
TCONS_00031999 mRNA upstream 623225 13255986 ~ 13268556 (-) False XLOC_016222
TCONS_00032000 mRNA upstream 623225 13255986 ~ 13268564 (-) False XLOC_016222
TCONS_00031991 other downstream 182174 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 743790 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 1501534 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 2659282 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 2659720 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031998 other upstream 619391 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 2361632 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 2395885 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 2469342 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 3876063 16508824 ~ 16512422 (-) True XLOC_016264

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_02528689_02568243.mRNA True 3465 mRNA 0.45 25 CI01000004 2528689 ~ 2569227 (+)