RNA id: XM_021605743.2



Basic Information


Item Value
RNA id XM_021605743.2
length 705
RNA type mRNA
GC content 0.48
exon number 4
gene id pla2g1b
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23606349 ~ 23607826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATATATCAGTTGCGTTCCAAATCAGTGACACTCTTCATCACCAAAATGAGGTCTTCTCACACTCTGCTGCTGTTAGCCTTCTGCCTGCCAGTCTTGCTGGCGGTGCATGAACCCAACCCATGGGCACTATGGCAGTTCAGAGCGATGATCGTCTGTGTTAACCCTAGCAGCTGGCCTGTGCTGGACTACGCTGACTACGGCTGCTACTGTGGGAAGGGCGGCTCAGGCACTCCTGTGGATGATCTGGACAGATGCTGTCAGGTTCATGACTACTGCTACTCTGATTCCATGCAGCACGAGGATTGCTGGGGCATCTTTGACAACCCTTACACTGAAATATATAGCTACCAGTGTGACAGAGCCTCTAAGACTGTCACCTGCAAAGaAAACAACAATCCGTGTGAGATGTTTATCTGCGAGTGTGACAGAAAAGCAGCCATGTGCTTTGACAAGGCGGGGTACAACCCAGAGCATGAGCACCTTCCCGGTGAGCACTGCTAGTATGGTAATGCACGGGGAACCAGGACATAACCTGCAGTGGCCCACCTTCTCTTGAAATCAATAACAGCTGTTATGATCCAATATGTGCCTCTGTATTGGTTATTGCTATTCATATACACCCACAGATAGAGTGGAAAAGACCTCCAAGAAAGCTATTAAATTCTGACATACCAAGGTTTAATTAAACTTTATTCTGTGAATAAG

Function


GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU554045 lncRNA downstream 11366 23594705 ~ 23594983 (-) True G487504
TU554044 lncRNA downstream 12195 23593953 ~ 23594154 (-) True G487503
TU554042 lncRNA downstream 15292 23590664 ~ 23591057 (-) True G487501
TU554037 lncRNA downstream 20795 23582929 ~ 23585554 (-) False LOC110525180
TU554028 lncRNA downstream 31714 23574387 ~ 23574635 (-) True G487495
TU554093 lncRNA upstream 66103 23673929 ~ 23674146 (-) True G487529
TU554106 lncRNA upstream 89392 23697218 ~ 23699515 (-) True G487538
TU554119 lncRNA upstream 95708 23703534 ~ 23704259 (-) True G487546
TU554118 lncRNA upstream 100192 23708018 ~ 23710130 (-) True LOC110525551
TU554113 lncRNA upstream 110560 23718386 ~ 23720835 (-) True LOC110525553
XM_021605738.2 mRNA downstream 15997 23588230 ~ 23590352 (-) True LOC110525543
LOC110525180 mRNA downstream 18457 23582127 ~ 23587892 (-) False LOC110525180
XM_021605737.2 mRNA downstream 45547 23550291 ~ 23560802 (-) True LOC110525541
XM_036979673.1 mRNA downstream 56196 23510610 ~ 23550153 (-) True si:ch73-138n13.1
XM_036979670.1 mRNA downstream 56197 23510610 ~ 23550152 (-) False si:ch73-138n13.1
XM_036979151.1 mRNA upstream 7041 23614867 ~ 23616981 (-) False aakb1
XM_036979149.1 mRNA upstream 7041 23614867 ~ 23617331 (-) False aakb1
XM_036979148.1 mRNA upstream 7041 23614867 ~ 23617385 (-) False aakb1
XM_036979152.1 mRNA upstream 7041 23614867 ~ 23617429 (-) False aakb1
XM_036979147.1 mRNA upstream 7041 23614867 ~ 23617488 (-) False aakb1
TU554033 other downstream 20795 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 20795 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 214287 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 220442 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 352988 23251286 ~ 23253361 (-) False G486953
TU554111 other upstream 106049 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 745707 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1053071 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 1098745 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1498379 25106205 ~ 25106570 (-) True G489038

Expression Profile