RNA id: XM_036981822.1


Basic Information

Item Value
RNA id XM_036981822.1
length 629
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC118965070
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23622807 ~ 23643348 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattgaatgaaaatTCCATGAGAAAATCTGttgccagcaagtgggagggtttttcAGCTGTTGAATTACATGTATTCAATGCGTGCAAGGGAACCACGCCTGCAAAGCCCATTGAGCACCTGCacaagTGCCCCTCCTTTCTCAGAAGAAGGATAGTATTCACCCCTGAAAGTAATTAGGTCATCTCTCATCTCTGGCTGGAGCCCCTAGTCTGCTTCAGTCTTCTCACACCTAAGACAGTCTTAAGACACTCGTCCCCAGCCGGTCCAATGTCTCCAGGGACGCCCCAGCCAACAGAGGTGAAGACCAAGCAGCTGCTGGATGTGAGTGCTGACCACTTGGGGGGCAGGGAGGCCCAGGAGATCCCCCCTCTGAAGAACTATGTCTACCTGACCATCCTCACTTGCTTCTGCCCAGCCTGGCCTGTTAACATCGTGGCTCTGGTCTTCTCTGTACTGTCTCAGAACAGTTATGATGAGGAGGACTATGAGGGTTCCGAGAGGCTCGGTAGGAAAGCCTTTCACATGGCGATAGCCTCCATGATCATTGGCCTCCTGATCTTCCTGATCTTATCCATAGTGCACTTTACAACGCATGCTGTATGAATGCTGGAGGATGAAAGATGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554045 lncRNA downstream 27824 23594705 ~ 23594983 (-) True G487504
TU554044 lncRNA downstream 28653 23593953 ~ 23594154 (-) True G487503
TU554042 lncRNA downstream 31750 23590664 ~ 23591057 (-) True G487501
TU554037 lncRNA downstream 37253 23582929 ~ 23585554 (-) False LOC110525180
TU554028 lncRNA downstream 48172 23574387 ~ 23574635 (-) True G487495
TU554093 lncRNA upstream 30581 23673929 ~ 23674146 (-) True G487529
TU554106 lncRNA upstream 53870 23697218 ~ 23699515 (-) True G487538
TU554119 lncRNA upstream 60186 23703534 ~ 23704259 (-) True G487546
TU554118 lncRNA upstream 64670 23708018 ~ 23710130 (-) True LOC110525551
TU554113 lncRNA upstream 75038 23718386 ~ 23720835 (-) True LOC110525553
XM_021604960.2 mRNA downstream 5121 23614867 ~ 23617686 (-) False aakb1
XM_036979150.1 mRNA downstream 5133 23614867 ~ 23617674 (-) False aakb1
NM_001165146.2 mRNA downstream 5172 23614872 ~ 23617635 (-) True aakb1
XM_036979147.1 mRNA downstream 5319 23614867 ~ 23617488 (-) False aakb1
XM_036979152.1 mRNA downstream 5378 23614867 ~ 23617429 (-) False aakb1
XM_021605745.2 mRNA upstream 1647 23644995 ~ 23668368 (-) False LOC110525548
XM_021605746.2 mRNA upstream 1647 23644995 ~ 23668368 (-) False LOC110525548
XM_021605748.2 mRNA upstream 1647 23644995 ~ 23668368 (-) False LOC110525548
XM_021605749.2 mRNA upstream 1647 23644995 ~ 23668368 (-) False LOC110525548
XM_021605750.2 mRNA upstream 1647 23644995 ~ 23668368 (-) False LOC110525548
TU554033 other downstream 37253 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 37253 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 230745 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 236900 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 369446 23251286 ~ 23253361 (-) False G486953
TU554111 other upstream 70527 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 710185 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 1017549 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 1063223 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1462857 25106205 ~ 25106570 (-) True G489038

Expression Profile