RNA id: XM_021605746.2


Basic Information

Item Value
RNA id XM_021605746.2
length 3213
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC110525548
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23644995 ~ 23668368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCTTGGCCAAACCCCCGCCCCATCACTCCACTCTGCCTGCTTTTCCATACGGTACAGTCTGAACACACGGGCACGGAATGGAGATGGAAAGGAGCCAGAGCAGCCTGTCATCCACGGACTCCCCTCACGATCCATGCAAAATGTTCATAGGCGGTCTCAGCTGGCAGACGACACAAGAGGGATTGAAAGAGTACTTTTGCAAGTATGGCGAGGTGAAAGAGTGCATGGTGATGCGGGATCCAGTTACTAAGCGCTCGAGGGGTTTTGGATTTGTCACTTTTGTTGACCAGGCCGGTGTGGATTCAGTTTCGGCAGTAACCAGGCATGAGTTGGATTCAAAAACAATTGATCCGAAAGTTGCGTTCCCGCGTAGAGCCCAGCCCAAGCTAGTGACTCGGACCAAGAAGATTTTTGTTGGAGGTCTGTCCGTGAACACGACCATCGAGGATGTTAAGGCGTATTTCGACCAGTTCGGAAAGGTTGACGATGCCATGCTCATGTTTGACAAGACCACCAACAGACACAGAGGATTTGGCTTTGTCACGTTTGAGAATGAGGACGTGGTAGATAAAGTGTGTGAGATCCACTTCCATGAGATAAATAACAAAATGGTGGAGTGTAAGAAGGCTCAGCCCAAGGAAGTGATGTCACCCATGGGCTCGGCCAGGGGGCGCTCTCGGGTGATGCCCTATGGCATGGACGCTTTCATGCTGGGTATCGGCATGCTGGGCAGGGGGCAGCACTGTTTCACTCAAACACAGACCCATGACTGTCCTTTCACCATAGGTTACCCAGGGTTCCAGGCAGCTACATATGCTAGTCGAAGTTACACTGGCATCACCCCTGGATATACCTATCAATTCCCTGAATTCCATTTAGAGAGGACCCCCCTTCTGACATCATCCCACCCCCCTGAGCTCACAGCCATTCCTCTGTCGGCATACGGACCAATGGCagcagcggcagcagcagtagctAGAGGAGGGTTCCTGGGAACCAGCAGCCCTGGGCCAATGGCAGACTTGTATGCAGCAGCCAATCAGGAGTCTGCTGTCAGCAGCTACCTCAGCGCTGCAAGCCCCTCCCCAAGCACTGGGTTTGGCCATAGTCTGGGGGTAAGACACAGCCCTTATCACGGCCCTCTGATTGCTACGGCTTTCACTAACGGCTATCACTGAGAGAGTCTGTGATCTGAGAGATGGAAGGAGTTGAAACTGCTTTGAGCTGATCCGACTCTCTATGGTTACTCCTCTCTGGCTGTGTGACCCTGCAGTTTGGACCCTGACCCTTGACCCCTGATGTCCCCGCCCCTCCTCCCGCTGAGGATCTCTCTTCTTCAGACTTCCTGTGTTCTGTCTTAACATCACCTCCTGTCTAACATGTTACTGTAGTTAGCAGAAAGGAACAACAACCTTTAAATGTTTCTGCTTGTATTAGAAAGACATACAGATAATTCTAGCTACTTTTTtcttttgttttatttcacttaaATGTTTTGTGAAAATTGTAATGTAATCTCACATGTCTTGATTCTTTGTTTAGTTTTCGGGATTTTTTTTGTCAGAAGGTGTTTTATTGAGAGGCGGAGAGGGAAAAAGAGTGATCTCCAGGTACGAAATATGTGAAGGACTGGAACAATAATTTCTATTGAATAAGTGTATATTTGTCTTTTAGTTCATACTGAATTTTAACAGAAAATGTctgattaattaattaaatttaaaaaaacgtaTTACAATGTTGAAAATGTATATCTTGGTAGGTTTTGAACAAGCATTTGTTATACTAATAATGATCAAAGTAACAAAATTGATAGTCTTGAGTCTATTTCCAGTCAGATTGAACCGTGTGATGTCTGTTTTTGTAAAATATTGTAAATATAACTGTATTTTGGACTCTGCAAAAAAAATGAAGAGTGTTGGGAGGGCAGGGGAAATGGTACGATGGTATTTGTTTTCAGCAGATGGTTTTATAGTTTCATTGGAAACCCAGACTGGAAATCCAGACTGTTCCAtatcatagtataatagagacggGAGGTCAGTCATCATCACAGGTATTGTCAGACACAAACTGTGTTTTTGTCAAGTCAGTTTTATCATTCTCTTTCCACTGGACAACATTCATGACACTAACATGAAGTTATATAGTTTTATTGGAGGGTTTATTACTGATGTATTTGTTTGATTCATAATATTTACTTGTCTTGGTTGTGAGCCTGACCCTGTCAGAGTGAAAGGGTTTTCTCCTATACTGTGAATTCACCCAGGAATCCCTTTTATCAGCACTGGGAGAGAGAAAGCTTGAGATGTTACATTAACGTGGGAGACGCGGGTGTTGGGATACTCCTTTAATATGAGAAAAACTAGCTGTTTCTATCCTCATTACTTGgtactgttttattttattgttgttttagaatgatcatttttttttatatgtaaTGGTTGTAAAGGAAAATGAAGGACAAGGATGCAGAAACAGTCGTAAAACAGTTTCACAATGGTACGATTTTACGACTCAATTCTTCTGCAgattgtgttgatgtgtgtgagtgcgcgtttgtgtgtgtgtgtgcattgtatGGCTATATGTGGTCACACTTATTGGCATCatgtgtgaaatgtattgtcaggGAATGGATACATTGGTGGTAAATGTGAACGTATTACTGCTATTTTGGTTTGTTACTGAACTTCCTTGTCTCTTTCGGTGTGTGGAAGGGATTTTTTCATTTCTAAATGAACACTATCTCAGAGGTGGTCCTGAGGCTCCTCCATGATGAGATTGTATGTATTTCTCAACCCCTCCTCCACACCGACAGAGACACTACATATCTGCTGGGCGACACAGACTGTAGCCATGAAACTCAAAAGAAGCAATATACTTTTTTAAGAGAACTCAATCCTTTTGTTCAGAAATGTTACATTGTTGCACTGGGAGGTCAAAATAAAGTGTTTTAATGTTATGGTTAGTTTAAGAAAAAGAGGCACTGTCAATTTCTATCACCAAGTTGTAGATTTTGATATTTTTCTAAGCCTGCTGGTTGCCACGGTGTTGCAGCCTTTGGATGCTGTGTTTACTCTGAAAGGTAATGTTCTTGTCAACACTGTAACCCTCTTTCAGTTATTTTTCTtcctgttttctttttttcttcggaaaaaaaaactttttaaaattcctaataaattattttaaaacATTCCATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554045 lncRNA downstream 50012 23594705 ~ 23594983 (-) True G487504
TU554044 lncRNA downstream 50841 23593953 ~ 23594154 (-) True G487503
TU554042 lncRNA downstream 53938 23590664 ~ 23591057 (-) True G487501
TU554037 lncRNA downstream 59441 23582929 ~ 23585554 (-) False LOC110525180
TU554028 lncRNA downstream 70360 23574387 ~ 23574635 (-) True G487495
TU554093 lncRNA upstream 5561 23673929 ~ 23674146 (-) True G487529
TU554106 lncRNA upstream 28850 23697218 ~ 23699515 (-) True G487538
TU554119 lncRNA upstream 35166 23703534 ~ 23704259 (-) True G487546
TU554118 lncRNA upstream 39650 23708018 ~ 23710130 (-) True LOC110525551
TU554113 lncRNA upstream 50018 23718386 ~ 23720835 (-) True LOC110525553
XM_036981822.1 mRNA downstream 1647 23622807 ~ 23643348 (-) True LOC118965070
XM_021604960.2 mRNA downstream 27309 23614867 ~ 23617686 (-) False aakb1
XM_036979150.1 mRNA downstream 27321 23614867 ~ 23617674 (-) False aakb1
NM_001165146.2 mRNA downstream 27360 23614872 ~ 23617635 (-) True aakb1
XM_036979147.1 mRNA downstream 27507 23614867 ~ 23617488 (-) False aakb1
XM_036979678.1 mRNA upstream 38189 23706557 ~ 23710173 (-) False LOC110525551
XR_002473770.2 mRNA upstream 38189 23706557 ~ 23710179 (-) False LOC110525551
XR_002473774.2 mRNA upstream 38189 23706557 ~ 23710195 (-) False LOC110525551
XR_002473773.2 mRNA upstream 38189 23706557 ~ 23710205 (-) False LOC110525551
XR_002473771.2 mRNA upstream 38189 23706557 ~ 23710214 (-) False LOC110525551
TU554033 other downstream 59441 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 59441 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 252933 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 259088 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 391634 23251286 ~ 23253361 (-) False G486953
TU554111 other upstream 45507 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 685165 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 992529 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 1038203 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1437837 25106205 ~ 25106570 (-) True G489038

Expression Profile