RNA id: TCONS_00033780


Basic Information

Item Value
RNA id TCONS_00033780
length 341
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_016218
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12703957 ~ 12704384 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGTGCACTGGCTGCAGAGTGCATTTGCTGCTTTGTCGTTTCAACGTGAATCTTCTCAACTCGCTACTGTCACAAATCCTGTCGGCACATCATTCACCGCGCGCGCGGTTGTGAGAATGGGTCATTCCCGGAAAGTGAATACTTGCATCGGATGTTGAGAGCTGACTAAATATTTTACCTTGGAGAACAACGCGGAAAAAGACAACTACAGTACTCACATCACCAACACGACGTGATACACTTATCATTGAACGCAAAACGTGACTTCTGACACATTATTAAGGGATGAACTCGTCTGCTGGAGCAGGGAATTACAGGAGAGGCTCAACCAAAGATGATA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031986 lncRNA downstream 722652 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00033352 lncRNA downstream 725363 11977036 ~ 11978594 (-) True XLOC_016213
TCONS_00031984 lncRNA downstream 936753 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00033779 lncRNA downstream 1145833 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00031977 lncRNA downstream 1365974 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00031994 lncRNA upstream 115615 12819999 ~ 12821531 (-) True XLOC_016219
TCONS_00033781 lncRNA upstream 479843 13184227 ~ 13189174 (-) False XLOC_016220
TCONS_00033782 lncRNA upstream 846183 13550567 ~ 13561727 (-) False XLOC_016224
TCONS_00033783 lncRNA upstream 846183 13550567 ~ 13573442 (-) False XLOC_016224
TCONS_00033784 lncRNA upstream 846183 13550567 ~ 13573898 (-) True XLOC_016224
TCONS_00031992 mRNA downstream 71196 12406713 ~ 12632761 (-) False XLOC_016217
TCONS_00031993 mRNA downstream 201462 12406714 ~ 12502495 (-) True XLOC_016217
TCONS_00031989 mRNA downstream 460744 12104389 ~ 12243213 (-) False XLOC_016215
TCONS_00031990 mRNA downstream 461262 12154840 ~ 12242695 (-) True XLOC_016215
TCONS_00031987 mRNA downstream 624239 12019341 ~ 12079718 (-) False XLOC_016214
TCONS_00031995 mRNA upstream 480918 13185302 ~ 13216269 (-) True XLOC_016220
TCONS_00031996 mRNA upstream 519371 13223755 ~ 13254821 (-) False XLOC_016221
TCONS_00031997 mRNA upstream 520636 13225020 ~ 13254594 (-) False XLOC_016221
TCONS_00031999 mRNA upstream 551602 13255986 ~ 13268556 (-) False XLOC_016222
TCONS_00032000 mRNA upstream 551602 13255986 ~ 13268564 (-) False XLOC_016222
TCONS_00031991 other downstream 479418 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 1041034 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 1798778 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 2956526 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 2956964 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031998 other upstream 547768 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 2290009 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 2324262 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 2397719 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 3804440 16508824 ~ 16512422 (-) True XLOC_016264

Expression Profile

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