RNA id: TCONS_00031994



Basic Information


Item Value
RNA id TCONS_00031994
length 1315
lncRNA type lincRNA
GC content 0.42
exon number 3
gene id XLOC_016219
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12819999 ~ 12821531 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTGGATTTGTGTTGAAATATTGATGCAACAAAGTGCTTTCCACTCGTGTTTGAATTGTATTCATCCATTCACGTTGATGATCGTGTTAATGGATGACCGCACACTTCTAAGTTCATCGGGCACACAGTTTACAACCTTGCTGCATATTAACACATTGCAGCACATTAACAAATCGACTCATAATCGCTTAGCTATCATAACCTTTTGTTTCATTTATAGCTGTAATTACAGAACATTTCAACCAATTGTTGCAATAAAAAACTGATGCATGAACAGAACAAAGCACGGGCGGTCTGTTTAAAACGGCAACACTGGCAGTGAGCTTGGAACGCAGACCGTGATAGAATTGAACATGACAAAGATTTCTCCAGAAACAAGCGACAACATCAGGTCTTTGTGGAGGGCAGGGCATTCTCTTGCTGACATCAGGGCTTTCCTGTTGCAGTCGGGTGTGCACGTCTCCAAGACCACTATAAGACGACACTATAGACGTCAAAGACCTGTAGGCCTTCCTAAAAAAACAACGGCAAGGAAAATTAACAGtaCTGCACTTAAAATGATTGACGAAATACTACACGAGGACGATGAGCGATCTGCTAAAAAGATTCAGAGCGAGCTTCTGTCCAGAATACAGTTAAAAGCATCAGTCTGCACTATcagaaaaacattaaaacaactcGGGTGGACCTATGGAAAAGACAGGACAGACCCCATGATCCGTGACCACAACAAGGTTCTCCGTCTTACTCAAGTTCAGCAGTGGATGTCTGACCAGGAGACCTTTGACAACGTGATATTTTCAGATGAAACGACCGTGGCTTTGGAGCGTTTTGCACTGATGTGCTATCGGAAAAAGGGTCGCCATGTTGTGAAACCGAAAGCAAAGCATCCAGTAAAGCTTCATGTCTGGGGAGCCATATCCCGTCAGGGACCTGGACCGCTAGTTGTGTTTGAAGGTAAAATCTCTTCAATTTGACTGAATCCTTTCTTTGCAGTTTCTTTatgtataacatttttttttcaggaattaTGGACAGATGTTTTTACGAAGACAGCATAATAAAATCAAATCTGTCTCCATACGTAAAACAGCACTTTAAAGGACCACATCGCTTCTTCCAAGGTAGACACAGTATGTAGGCCtactgtactgtgtgtgtgtgtgcgtgtgtgtgtgtgatattttaTGATTTACATTTGTTTCCGAATCTTAAACTttctaatgtgttttttttttttcagacaacgACCCAAAACATACAGCAGCACGACATTGTATTGCTGCGGAGGGGATCAACTGGGTGAAAACCCCAGC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194572

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033780 lncRNA downstream 115615 12703957 ~ 12704384 (-) True XLOC_016218
TCONS_00031986 lncRNA downstream 838694 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00033352 lncRNA downstream 841405 11977036 ~ 11978594 (-) True XLOC_016213
TCONS_00031984 lncRNA downstream 1052795 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00033779 lncRNA downstream 1261875 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00033781 lncRNA upstream 362696 13184227 ~ 13189174 (-) False XLOC_016220
TCONS_00033782 lncRNA upstream 729036 13550567 ~ 13561727 (-) False XLOC_016224
TCONS_00033783 lncRNA upstream 729036 13550567 ~ 13573442 (-) False XLOC_016224
TCONS_00033784 lncRNA upstream 729036 13550567 ~ 13573898 (-) True XLOC_016224
TCONS_00033785 lncRNA upstream 850581 13672112 ~ 13673864 (-) True XLOC_016225
TCONS_00031992 mRNA downstream 187238 12406713 ~ 12632761 (-) False XLOC_016217
TCONS_00031993 mRNA downstream 317504 12406714 ~ 12502495 (-) True XLOC_016217
TCONS_00031989 mRNA downstream 576786 12104389 ~ 12243213 (-) False XLOC_016215
TCONS_00031990 mRNA downstream 577304 12154840 ~ 12242695 (-) True XLOC_016215
TCONS_00031987 mRNA downstream 740281 12019341 ~ 12079718 (-) False XLOC_016214
TCONS_00031995 mRNA upstream 363771 13185302 ~ 13216269 (-) True XLOC_016220
TCONS_00031996 mRNA upstream 402224 13223755 ~ 13254821 (-) False XLOC_016221
TCONS_00031997 mRNA upstream 403489 13225020 ~ 13254594 (-) False XLOC_016221
TCONS_00031999 mRNA upstream 434455 13255986 ~ 13268556 (-) False XLOC_016222
TCONS_00032000 mRNA upstream 434455 13255986 ~ 13268564 (-) False XLOC_016222
TCONS_00031991 other downstream 595460 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 1157076 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 1914820 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 3072568 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 3073006 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031998 other upstream 430621 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 2172862 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 2207115 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 2280572 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 3687293 16508824 ~ 16512422 (-) True XLOC_016264

Expression Profile


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