RNA id: XR_002473771.2


Basic Information

Item Value
RNA id XR_002473771.2
length 2171
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110525551
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23706557 ~ 23710228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGGGAACTTGTGACAACCGTTTGCCCTGAAATAATTAATTACCCATAGTGCATTGCTTTGTTGTCACACGTGCTCGATCCAACATGTCAGCGCCTGTTGGGACGATGGCCGAAGACTCAAGCAGTGAAGATGAAGATCTAGAACATTTTAAGGAAGCAGCTTGGAGTTTTGGCACATATGGAACTAATGGCACACACAATGCCAACCCGGCAGCAACGTCCTAACAGTAACTACTATTGCTTTAGATGGGGTAAGCAATGTCAAGCAATCCCGTCGTGTGGCTGTATCTAAACATGAACATGATGGGAAGGAGTTGCAGACGACCCCGGAGTTCCGTGCGCACGTTGCAAATAAATTAGGGGCTCTGCTTGACagGTTTGGAAGGTTTCCGGCTGTTCACCACATCTGTCCCAGGAGAGTTTACCATtgatccccctcctcctcctgtaaGGCGCAGGCCCATCTCCAGCTCAAGTGACAGTGAAATTGAGATGAGACTGAGAGAGGCAGCAGTGTCAGTCACAGACCTCCTATCATCAGCTCTCCCCAGCGAGATTACACATTCCCTGCCGGAGTCCCCCAGCTCAGAGAAATgaagaagaagaacaacaacaacaaaggagaggaggcagaaagagaggacCATAATAACAGCCCTGTCCCAAAGAAAAATAAGAAAAGGAAAGCTCTCCAGGGGGAGTGTGGAGAGGTAGAGCACTGTGGAGAATCATCACCTGATGCTAAATCTGATGAGGAGCAGAAGAGGCCAGAAGAGGACATTTTACccctgaagaagaagaagaaaggcaCCGATGAAAGATGAAGTATAAAAGCACTGAGAGACTTGTGTGCTGTTATTTGGGATGTTGGCTGTTTGTTCCATACTTGTGAGACCTGTTGTACTTGGGAATCTTATCACTGATTATAACATGGTCAGGTCATACACTTATATCACAGCAATGTTGTACAATGTAGATTGCATTCCAGAAAATAACAATGTGAACTTTCAGAAATGTGAAATACGTTTTTCACAAGATATTTGATTACCGTTTTCTCTACCCAAAACACAATTTGTTCTATGCCTTGTTTCGTAAAGGACGTTGTTTACACTGAATTCGACTTACATGTAAATTTATGAGCAGGAGGCTACAATGATTTTTTTATTAACAATTCTTTGTTGATAACGTACACACTCTGGCCAGTTTATTTGGTACAATACCCTGTTCACAAAAATGGATCGCTtgtacagacagtgagtcacttGGCTGTGGCTTGGTATATAAGAcgggcatcgaggcattcagttactgttcaattgaatgttagaatgggcaaaacgagtgacctaagcgactttgagcatggtatgatcatctgtgccaggtgcaccggatccagtatctcagaaacagccACCCTCCTGGGCTTTTGACGGACAACAGTgcctagggtttacagagaatggtgcaacaaacaaaaacatcagtcagtggcagtcctgtgggcaaaaacaaCTTGTTGAAGgaaaatggcaagaatcgtgcaggCTAACAGACGGGCCACAAATAGACATATAATGGCGCAGAagggcatctcggaacgcacaacttgtCGATCCTTGCCACGAATGGGCTATAGCAGCAGACAACCACACTGGGTTCCTTTCcttatcagctaaaaacaagaagaagcggctacAGTGGGGATGCGATCACCGACAAATGCTGTTGTAttatgctgatggcagagtcaggtttTGGTGTAAGCAGCATGAAtccatggacccatcctgcctggtgtcgaCAGTACAGGCTGGTAGCGGTAGTgtactggtgtggggaatgttttcctggcacacgttaggtctcttgataccaattgagcaaccaAATATTCCGACACCTAATAGAATTCATGCCCCGAAAAATTCAGGCTgctctggaggcaaagggggtctGAACCGGCACTTGATGGGTGCAGTGCTTCATTTCAGTTAGATCTTGCCAGAACAGGATCTGGCACCTCTCCGTTTTGGACTATTTGGCCTGATCCGGTACCTCTCATGGCATGAACAATTATTTATCTGAtttattgaaatacatttgccaaagttatagaattactgctgtctgttcagaaagaaATTAAATAATTCAGAATACACAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554119 lncRNA downstream 2298 23703534 ~ 23704259 (-) True G487546
TU554106 lncRNA downstream 7042 23697218 ~ 23699515 (-) True G487538
TU554093 lncRNA downstream 32411 23673929 ~ 23674146 (-) True G487529
TU554045 lncRNA downstream 111574 23594705 ~ 23594983 (-) True G487504
TU554044 lncRNA downstream 112403 23593953 ~ 23594154 (-) True G487503
TU554113 lncRNA upstream 8172 23718386 ~ 23720835 (-) True LOC110525553
TU554126 lncRNA upstream 19094 23729308 ~ 23729536 (-) True G487553
TU554216 lncRNA upstream 129548 23839762 ~ 23839997 (-) True G487620
TU554224 lncRNA upstream 147648 23857862 ~ 23863007 (-) True G487628
TU554255 lncRNA upstream 204152 23914366 ~ 23915175 (-) False G487650
XM_021605753.2 mRNA downstream 38189 23644995 ~ 23668368 (-) False LOC110525548
XR_005052044.1 mRNA upstream 3737 23713951 ~ 23717830 (-) False LOC110525552
XM_021605763.2 mRNA upstream 3741 23713955 ~ 23717830 (-) False LOC110525552
XM_021605764.2 mRNA upstream 8166 23718380 ~ 23727442 (-) False LOC110525553
XM_021605765.2 mRNA upstream 8166 23718380 ~ 23728979 (-) False LOC110525553
XR_005052045.1 mRNA upstream 19786 23730000 ~ 23750837 (-) False LOC110525554
TU554033 other downstream 121003 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 121003 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 314495 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 320650 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 453196 23251286 ~ 23253361 (-) False G486953
TU554111 other upstream 3661 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 643319 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 950683 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 996357 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1395991 25106205 ~ 25106570 (-) True G489038

Expression Profile