RNA id: TU554111


Basic Information

Item Value
RNA id TU554111
length 3408
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC110525552
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23713875 ~ 23717830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGAATTTAGTAAAAGTTGCAGACAGCCATCGACACAGTCGCCttaacaaacacaaaacaaccaAGATATGAGCGGCTCTAACTCTCGAAACAAGACTGCAGCCACAGTCAAAGGACCGGACACCGATATCGGCCCAACTGCAAATTCCAGGGAGCGAAAGTCCGGTGGAGGTGTACTGAAGAGACTCAAATCGCGACGAAATCAAACCGATAAACAGCGGCCTGTTATTACAGAAGAAGAGCTAAGGGCGCTAGGAAGACACATCACACCGGACGAAGTCCTTGGTCTGCGTGCTGTTACACGGGATTATCTATGTAAACCTGAGGACAATGTCTACAATATTGACTTCACACGTTTCAAGATTAGAGATCTGGAGACTGGGACAGTGCTCTTTGAGATTGCTAAACCTCACAACTGTGGTAAACTCAAATGTCTTGCCCAGCATGAAGTTTCAACTTTTCCACCACACTTTGGCACAGCATAAATAGCTTGGATAGGCCACATCTTAAAGGTAAACTCAGCAATATGACATCATTATACACATTGGAGTGTATTCCTACTTATAGAAATCAAGTCCAGGTCACTGTCAACTTGAACAGGGCACCAGGCTCAAGCTGTAAAACAGCCTAGTTGGAAAAACCACTGCTGACGGTGCACTCGTGTTATTAGGTTGGGGTACAAAACTAATGCTCAAATCTGCCACTATATTTTCTCTTTCCAATGAGGACTTGCCCCATTAGAAGGTATAAATGAGAATGCCCATAGTCTTGGCAGATTTTAGCATTCGTTTAGTAAGCAGGAAGTTGCCCCGCTGTGTATGATGTAGTATCGCTAAGTCTACTTAGAAGGGCCCAGACCAAATGAATCAGTCTATTATTTCAAGTAAGGCATAACACAAGCCAAGTTATTCCCCCTATGATAATTGATGTAGTCCTTACACAAATGTTGTAGATACAATTTTAGGTTGAAATCAGAGATGACATGTTGACACTTATTTGGATGTCAATTCCATTTTAATTCATGTTCTCTATCAGACCCTGAAGATGAGGAAGAAGAGAATGGAGACGTAGACACCAGTGCTGGACGCTTTGTGCGGTATCAGTTTACGCCGGCCTTCCTCAGACTGCGGACTGTTGGTGCAACGTAAATCAGTGGATTAAACAGGAAACACCACATTCATTATTAGAAGTCATATAACTCGTAGTTGAAAAACCACATACTGTGATTATACTTAAATGTTTCATAATATATGTGCTTTCTGCTTTTCAATATGGCAGGCTTACCTCAAGCTCTAGTATGCTGTTAGCACCCTCAAATACAGTACAGGTCCATTGCTTATAACTCAGCAGTTACTTATGCAGACGAATCATGATCTCAGTTTCATGCTCAATTTCGTTTGCTGGTGTGGCTTTGCAGCTCTGGCAACCAATCCAACTGTGGTTACAGAGACGATTTGTCAGAGCCCTGACAACACACTTAATGCTTTTCTCCTAAAGTTGTTTTACATGGCTGGCAACAATACAATTGAAATAATCATCCTTCTTTTTGACTTTTAGAAATATAGATGGTTAATGAATAAAGCTTCAATTCTAGTGGCTTAAGCCATTTCATGCAGCTATGTTCAGCATGTCCCTACCAGTATCTCAAgtgcctctctttcttccccgCTTTCAGTGTGGAGTTCACCGTGGGGGACCGGCCTGTTAACAGCTTTCGCATGATAGAGAGGCATTATTTCCAGGATAAAGTTCTCAAGAACTTTGACTTTGACTTCGGATTCTGCATCCCAAACAGCTGCAACACTTGTGAACATATCTATGAGTTTCCCCAGCTCCCTGAGGACCTCATTTGCCTAATGGTGGAGCACCCGTATGAGACCAGGTCAGACAGCTTCTACTTTGTGGACAACAAACTGATCATGCACAATAAGGCAGACTACGCCTACGATGGGGGCGAGTAGTGCCTGAATATTAGCGTCTTGTGTGCAATGCAACGCAGCGGTCACATTGCCCCAGAACACAACCACAATATAGCCCTTTTGGGAACAGGAGTATACTTCCTCCACTTCAGACATTCCAACAAACTTTACCAGCCCCAGGTTTGGGAAAACAGGACCATGTCTGCCTTCAAAACAAGTTGATCATTTATTTGTTACCCCGTACCCCTCTGTTGCTGGGACTCATAGGAAACTGTTGTCAATCACTCTTTTGTAATGTTGAACATGTTTTTCTTTTAATCTTTTCGAACATTTAAATGGTTACTTTTAATTCGTATAATTTTAATCTGCCTTGAGTTAGTTAGTTCAATATCCTTGTTTTTGTTGGAATACATTTAGGCATATCTTGTGGGTTTGTGTAACTAATCAGCCTAATGATCTAATACACTCATTCAAATGTAATAATATTAGTTTcaatttttcaaattgtcatttTTTTCAGGGTTGCCATTTCCCTGGTGAAAGGCCACTCTGTTACCAAACGGCTctacagagggaatctggaactTTACATGATCCCAAAGTGAATGTTGATTACTGGATATTTTAGCCCATAAGATGAACACTGGTTGAAGTTGAGCATGTTGTTATTTTGTCTATACAACAATAGTTGACAGATGGCAAGCCAATTACAACTTTTTGATACCACCTAATTTGATTGAAcaagtaaatacatttttgctaCTCATTGTGCTCTAGTAACAATCATTATCCTTTGCTGTGTCTTTCCTCCTCAGATAGTGGGCTAAATATTCAGCTGTGAGACTAACAAATGCTCCATGACTTAGAAATCTTGCCTTGATAGAAGCTGTATTATTCATATTGGGTGTCCCATTTCACCTCTAGCTGTATATACAACCAATAATCCCTGTTGGCTATGAGACATTTTTGTATTAACTGCCATTGGTAGTAAGTCACAGATGGCACCCCTGGCCTTTTTAAGTTGTTAGCATTTGTGACAGTGCTGTAAATTTACTTGCAGTGTGTTTGTGCCTGCTGGAGTGATACAGAGCCTCCCAACACTAAATTAAACCTCTCCATGGGCCTTTGTATTCAGACTGTTAAACTCAAGgctttgtgtgtgagagaaatcCCTGTCAAGTCCAGCTGTCGATCAGCTGTGCTCCGCTACACATCTCCTCCAACACTCATCAACAGTAAAAAGAAGGCTGGAAAAGATTTTGTGGGTAAAATATTTTTCAGCTATGAAATGATAACTACAGGTCAATGCTCAGTGGAAGGTATGTGATGATAATCACTTTCTAGACTTGTGatatgtgtattttttttattattattattaataattacAGTTGCTGATGGAAAATTGTGATGGCATCCACCATTATAAATTCTGTATTTCTAATAGCGCCCTCAAATTGTTAAGATGTCGCCGAAGAGAATagctga

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060271 cilium assembly biological_process
GO:0007399 nervous system development biological_process
GO:0005929 cilium cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554118 lncRNA downstream 3745 23708018 ~ 23710130 (-) True LOC110525551
TU554119 lncRNA downstream 9616 23703534 ~ 23704259 (-) True G487546
TU554106 lncRNA downstream 14360 23697218 ~ 23699515 (-) True G487538
TU554093 lncRNA downstream 39729 23673929 ~ 23674146 (-) True G487529
TU554045 lncRNA downstream 118892 23594705 ~ 23594983 (-) True G487504
TU554113 lncRNA upstream 603 23718386 ~ 23720835 (-) True LOC110525553
TU554126 lncRNA upstream 11525 23729308 ~ 23729536 (-) True G487553
TU554216 lncRNA upstream 121979 23839762 ~ 23839997 (-) True G487620
TU554224 lncRNA upstream 140079 23857862 ~ 23863007 (-) True G487628
TU554255 lncRNA upstream 196583 23914366 ~ 23915175 (-) False G487650
XR_005052043.1 mRNA downstream 3647 23706557 ~ 23710228 (-) False LOC110525551
XM_021605759.2 mRNA downstream 3660 23706557 ~ 23710215 (-) False LOC110525551
XR_002473771.2 mRNA downstream 3661 23706557 ~ 23710214 (-) False LOC110525551
XR_002473772.2 mRNA downstream 3661 23706557 ~ 23710214 (-) False LOC110525551
XR_002473773.2 mRNA downstream 3670 23706557 ~ 23710205 (-) False LOC110525551
XM_021605764.2 mRNA upstream 597 23718380 ~ 23727442 (-) False LOC110525553
XM_021605765.2 mRNA upstream 597 23718380 ~ 23728979 (-) False LOC110525553
XR_005052045.1 mRNA upstream 12217 23730000 ~ 23750837 (-) False LOC110525554
XM_021605766.2 mRNA upstream 12218 23730001 ~ 23750829 (-) False LOC110525554
XM_036979680.1 mRNA upstream 14229 23732012 ~ 23750838 (-) True LOC110525554
TU554033 other downstream 128321 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 128321 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 321813 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 327968 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 460514 23251286 ~ 23253361 (-) False G486953
TU555138 other upstream 635750 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 943114 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 988788 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1388422 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1779180 25496963 ~ 25497489 (-) True G489511

Expression Profile