RNA id: TCONS_00033781


Basic Information

Item Value
RNA id TCONS_00033781
length 4008
lncRNA type sense_over
GC content 0.33
exon number 2
gene id XLOC_016220
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13184227 ~ 13216269 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcagctgggaagCATTTGTGGAGCTCTACAGCAGCCAGAGGGATTCTGTGTTTCACAGTTCATGGTCATCAATAGTAACGGTCTTTGGTCTAGCTGCTCTCGGGGCTGTTGGCTTGACCATAGGAGCCTACCTTGCTCAACAATAAGGAACCTTCTGCTTCTTCACACGCCTTCCCTCTTTTCTATCGATTCAACACTCTCTGTGCTGTCAAAATTCCATTCTCTGCTTTCCCCAAAAGACATTCATGTCCCAAGACTGATCCTCTATAAAGCCTTGCTCCCACTCTTTTCAAGTCTTTCTTTCCCACTTTATTTCAAGTCTCTGCTTTCAGaaagtcagaaaaaaaaagaaaattaatgcacAGCCGACACATAATGAGAGGTTGGCAAAAAAGATAGACAAAAGGTGAAAGACACTGATGACATTGTTTAaattaattcacattttaaataattttgagtGTAGTACATAACAGACTTACTGGATTCCTTATATAAATATGAAGATGATTATAAAGATATAATTATCTGCATGAAGCATCTGCACTAAAGTAGATCCTggttttttaaacaagtcttgtTTTTTGTAGGATAGTTTTATAGTGTATGAAGAAAAAGAAATAGTGCAACTGTTAAGGCAGTTGTTTAGCCGATAGTGTATGTAAATGTTTAGTCACAGTATCCCTTGCACACATGGCAATTTTGATTTGATTATAGTCGACTCTGCCGCGATTGCTCATCTAAAAAAAGAATGCTACCATCAAAACCACGGTCCACACTAAAAAAAGTAGACTGAGACCACTGGACAGTTAATTCTCTAATCACTTCCAAAGGACTCTGCTGCAGTTAAAATGAAGTATGAATGGATCATGGAGTTAAGACAACTGATGAGAAACTAAAACCGGACAAGATTCACCATCAAAAAGGCAGAAGGCTTAAACCATCTTTAAACATCTAATGCAACACAGAAAGTTCAAAACAAACAATGTCcaaaaaaggaaccaaaaacctTGTCAAAATATTCAATGTGGCTTCAGTTATTCAACTCTAATCAtgtgaagctccaagaacatttctgtgtatcaaaaaaaaaaaaaaaaaagaaattccacAATTATTATGGGCGATTTGACGTTTGCAGTTGGGCTGCTGACTCTAATGGCAATACTTACTAAAAGCACAGCCCGACGACCTGCCGTGGGAGAAAAGGTTCATCATTACAGTTTTTAtaattacaattgaaccactgaaCTTACATGGGATGTTTTGAAAATAGTCTTGATTCCTTTTCCGGacattgaacatctctggactgctgtctatggaggatgaggtaCCTTATATCTTAATTTTTGCTCAGAAGATAAATGAAGGTCTGAGGagggttttaatttttaattaagggttttttattttattagctctTCACAAGTTTTCTGGTGATAAAAACACCATAACGTGTGTATACTGTGTATTGTCTTTAACCCAGCATACAATATTGTTTTGAATGTTCAGTAAGTTCTGTCACATAAAATTTGACCTAAAGTATCACATTGTAAACACTGAGCAAACCAGGACCATTGGTGCATTCACATCATGTTGTGGTTACAAGATTAGTAGCATTCTCGTGGAAATTGTAAATAGAATTTGTAAACTAGAAGCTTTTAGACAGCTTATTTAAGTTTCTTGTACCATCTGACTGTTCTACCACTTAACCACTAAAGAATTTAGATTAATTTAGGGTGCTATGATCAGGTGTTAAGAGTTGCATACACAGATATGCATAACTTTAAGTCAGAGAACATTAAACAGCCCAGAAGAGAATAGTACGTCTTTCAGGTACATCCCTCAAACATCTCTCTTCAGAATGTGACAAGCACACCATGTGTCATGATAAGAAACAAAAATCATCTTCACGTTTGGAAATATTCTACATATTTTAGCACTAATTAGAAATTCAGAGCACCTAATGTCAGTCACCTAAGCAATTACATACATTAGCTTTTGAAAATATTACTTTGTTTGATTTATTCAGTtacaaaatatttgttaaatgaatttaaatgtaaataaattgtatacATGAGTAACTGTAATAGGATGTAATAGGCTATTAAGGACTCTATTTAGCAAAACCAAATACAATTATCCAAAACTAGCTGAATTATATAAACCCAATGCACTTCTTCCTGtttattcattttgattttagtggaacaaatgaaaaatacaatatacaatacaGATCGCAGATGTCCTTATACACAAAGAATCCCAGCTTCAGAAGAGGCAACAACAAAATGTCCatgttgtaaataaaacaaatattagtaATTGATTTTACTTAGTCATTTGTGATGTATAATggcaatttaaattaaaacaccATATTTCATGTGGTATATTTCATGTGGCTTGAGCCGCATGCGTTTCATTCTGCATTCTTCATTTGTCATTCTGACAAAATGTCTTAAATCAAATATATTCTAAATGCTTTACTGTAAAACATTGaattaataagaaatgttttcaATTAAACTAAGTTATGGTTTTAGGGGGTCATCTGCTAGTGGCAAATAATAATGGCTACCAAAATATAATTATAGTTTAGCTTGACATAAGCAACAAACACTTTCTTAACCTATATCAAGATGtattctataaaaaaaaacagtcttaaCCAGTCATGTTTCTCAACTACATTTAGGGATTTTACACAACACTGAAATAATTAACACTTTAAAACAGGTTTCAAAGTAAAAGCTATAACTTCATGCATTTTAAAAAGTTCAATTATATATGCCCTTCGAAAAGCTTTTAATAtggatttaaatattattattcaaccCACATCAGAAAATAGTTTGTGACGCACTCCAAATGAAACTGAACaaatttgtaaattatattaataaattagcagtttctttgtattttgtgattcgtgtttttttctttttctctgtttATTAAGCCTTTCGAATTGCATTACAggactttgattttattttctttcaacaacttttaaccttgaaaagtttgagtCTGGGTTGGTGGTTGTAGTTCTCAGGGAAAggcttgtaataaactgccagtacattttctgttattttaaagatgtatttttctatatattatatCTTATCCATTATATTAATTCaaacaaaatgtcaataaatttCACTTTGTTAATGTTGTGATAACTAGCAATGTAGCCGTCGCGAATGCCTGTATAACACTCCTTGTCGTTGTGGAGCTGGGTCTATACGCCCCCCTCACTTTCATaaacagaccatttagaaacagatgattaataattatatgaacattttGGATCTTATTCAGCTgccccccacttttaaaatgtctactACGCCCCTGCTACCATCTGATTCTATGTTGAAACTTGCCTGCCTGACTACTTCAATGAAAGCTGCGTTGATATCTAACCCTTCTTGTTTACACCATTACAGACAACTAAGCAACAGCATGGATCCAGCAGTATTTTTAGTTCATCTATGTCAAGGTGAGCCTTTTCCTGAGAACTACATACAGGATTTTCTGAACATTGCTGAATggagataaataaaataaaataaatgaaaaaaaaaaatacagcatcaAGTCttatttctcctttttttttaaaattgtatacaataaacacaaattaaagtAAACACTTGTATAGCAGGATGTTTTGTTGGACATTGTTGGCGTGATGTTTTCCACAACTTTATGACCAAGAATTTAGTATATTATAATGTCAGAATCTGTAATCACACTAGAGCTCTCTGTGCACACAATATAATTGATAAGATTACAAACTTCAAATTGCAGCACATTCAtcaaaaaattaaacaagcaaACGTACTTGAAAAAGTTTATTCTGCTAATTTTAAATGGTAATTTTACAGTCTGTTTAAACAATTCTGAAATTAATTGCATTCATGCCAAAAAAGAGATGTAGCCTAAATCAGTCtaacaatacatttgttttgACGAGAC

Function

GO:

id name namespace
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process
GO:0097458 obsolete neuron part cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031994 lncRNA downstream 362696 12819999 ~ 12821531 (-) True XLOC_016219
TCONS_00033780 lncRNA downstream 479843 12703957 ~ 12704384 (-) True XLOC_016218
TCONS_00031986 lncRNA downstream 1202922 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00033352 lncRNA downstream 1205633 11977036 ~ 11978594 (-) True XLOC_016213
TCONS_00031984 lncRNA downstream 1417023 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00033782 lncRNA upstream 361393 13550567 ~ 13561727 (-) False XLOC_016224
TCONS_00033783 lncRNA upstream 361393 13550567 ~ 13573442 (-) False XLOC_016224
TCONS_00033784 lncRNA upstream 361393 13550567 ~ 13573898 (-) True XLOC_016224
TCONS_00033785 lncRNA upstream 482938 13672112 ~ 13673864 (-) True XLOC_016225
TCONS_00032005 lncRNA upstream 594219 13783393 ~ 13784508 (-) False XLOC_016227
TCONS_00031992 mRNA downstream 551466 12406713 ~ 12632761 (-) False XLOC_016217
TCONS_00031993 mRNA downstream 681732 12406714 ~ 12502495 (-) True XLOC_016217
TCONS_00031989 mRNA downstream 941014 12104389 ~ 12243213 (-) False XLOC_016215
TCONS_00031990 mRNA downstream 941532 12154840 ~ 12242695 (-) True XLOC_016215
TCONS_00031987 mRNA downstream 1104509 12019341 ~ 12079718 (-) False XLOC_016214
TCONS_00031996 mRNA upstream 34581 13223755 ~ 13254821 (-) False XLOC_016221
TCONS_00031997 mRNA upstream 35846 13225020 ~ 13254594 (-) False XLOC_016221
TCONS_00031999 mRNA upstream 66812 13255986 ~ 13268556 (-) False XLOC_016222
TCONS_00032000 mRNA upstream 66812 13255986 ~ 13268564 (-) False XLOC_016222
TCONS_00032001 mRNA upstream 67950 13257124 ~ 13333991 (-) False XLOC_016222
TCONS_00031991 other downstream 959688 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 1521304 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 2279048 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 3436796 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 3437234 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031998 other upstream 62978 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 1805219 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 1839472 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 1912929 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 3319650 16508824 ~ 16512422 (-) True XLOC_016264

Expression Profile

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