RNA id: TU554113


Basic Information

Item Value
RNA id TU554113
length 2450
lncRNA type sense_over
GC content 0.37
exon number 1
gene id LOC110525553
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23718380 ~ 23728979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAACTTGTATGTGTTTTCCACTTAACGGTACATTAGCTTGGTTTGCATCTGGTGAAAGGCCACCTCTGAAAGGTTATCTGAAATAGTATAGAGTGATTAAGTTAGTTACTTTGCCAACATTGAGGGACCTGGTAATTAAACAAATTCTCAAGCAAGTGGGACAGGTCCCGAATCAGTAACATGTCTGAATTGTCACAGAGATGCATGTAGTGTAGTCCTTTGTCATGGTCACTGCCTTTTCCATTCATGGCTGTGCATGCCTTCTTTTGATTCACCAAAGTGTTTTGTGTTGTAGAATTTTGTTCTATAAAACTCCCAGTAATCCTCTGTTCATAACACTGTGATTGATATAATTTCATGTTTTAACTCACAATGTTGGTGCTGGAGTGATGATTAAGTACTAGGTCAAGATATAACGTAAACATCAGAAGTTATCCCAATACAGTGTGTCATTAGAATGAATAACCGGAAGGGCCTAcgcatttattttgtatttatttactaTTTATGTAAAGTCCTCATGGAAAAACTGCTGGATTCTTTTAGTATATTGGAATATaaatgtagggtgtgtgtgtgtgtgtgtcagctacACAGCTACATAGAAGGTTAGAAAGTGAGGGGAGTTGGAAAGAACTAGTTGTTACACAACTTTTACTAAGGCCAACCAAGATTGTCAGTGGTAGCCTAAATTGAAACTGGCTTTGAGTAGAAAGCTTAAGAGCAGCCAACTTAACAATTATTAAATTGTGATTCTTTTCCCAGGGAAAAGTGTTTCTAAAAGCCAGCTCCCCAAATTAGTTTGAAAAGTGTGCAATCAGTCAAATCAACATGTATAAACGGTGGGCTTGCACCAGTCTTAATTATGATCTATATTTACCTTGCACATGTGAGTATCTATAGATGTGTGTACATGTTTCACTATAGGGAATATTTtccctctttcccatctctccatGAAATAATATTTTAAGTTTAGGCCCTTTGATTCCTTTCTgaagctgtttaaaaaaaacttgcCTTAAAGTGGACCGCAGCATTTTGTTATTACTAATCTCTGAGGTGTTCCACGGACATATCCATATGTCCTTCAGTACAGTTAGCCTGGAAGTCAGTAGCTGCATGTTTGCATTGTTTTTGTGTTTAACTGCCTCTGTATCAGGAACAAAGCTCTTTCCATGAGGGAAAAATCTTTTACCAAGCCTATTACACTTGCCTCTCCACACTTGTCATTGGTTTTATACTTGCTGAATACTTGACAAATAGATGATCCAGGTGTTATaaattctctctcactcttgtgGTTTCCCCCTCTATGTTCCATGCTGCTGGAAAAAAACAAGGGAGAGGTTACAATACTTGGTCAGCTGATAGTTGTTTGATTTGTTTtgtataaaaaatacatttacaaaaagaAACAGTATCTAATAAGAGAGAAGCACCTTTGTTACTTATttgaaaaaatgaaaaaaagttTATTTAATTCAGTACCAAAGTTACAATCTTTTGTTGGCTAATTGAAATTGCTACACAGTTGcgtgtgtatatactgtaaggTACAATATCACACTTATTGTAGTGTGACAGCGGTTATTTTCTAATCTAAATATTGTTACTATTGAGGTGTTTTTAATAGTTAATTTTAAAGAAGACTGGCATTTCTGCTGGGGATAAGTTACAACGGTGGCACTGTAGAAAAGAAAAGGTCTTGACTGACCACACTGActgtcaggaagagaggagatTGATGAAGCATGGACATTTTTACATGTATAGTTTAAGAAAGGGGTTTAATCTGAGATATTTGCTTAATGACTAAAGGATTTGTAGCTTTTTATTCTTTCTCAGGATCTGTTTTGTTTGACTTTTTACCAGGATGTTTTAGTGGTGTGACTACTTGGTTTATTTTCAAAGCATTTGTCTGTCATTTGTTGtttgtacattttattttaattgaaTCCCTGTTGCCTTGAATTTGAATACAGTTGTGCATTATCATTGTCAGCTTTGAGGTTCCATTTTTTTGGTGTGCTTTCGATTACTTCATTGGATGTTTAATTTTTTTTGCCCACAAGTCCTAGTGTGCAAAAATCCTAACCTTACTTGAGCTCACCTAAGATAAGAACCAAATACTTGCTACACCACTCTCCCATTAGCCCTACTGAGGTGCAGACGGAACAACCATACACTCTTGTGCAGTCCATACACAGTCTTATGAATCACAGAATGAGGGTATGAATTAATTAGTGTGAATGTGAAAGAAAGCGATCAATGTCAATAAGGAATCCTACTCTACTTATTGATTTCTCCCACCCCATGAGGGCTTCATGCAGCAGGTGGACTGATGGAGTCCTTTGAGATGCCCCCTCCATACTCAGTTGTGGCTCTACAAATAACATCTAAGTGGGAACTGCTGATAAATGCTGTctcttttttaaataaatgtgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554118 lncRNA downstream 8256 23708018 ~ 23710130 (-) True LOC110525551
TU554119 lncRNA downstream 14127 23703534 ~ 23704259 (-) True G487546
TU554106 lncRNA downstream 18871 23697218 ~ 23699515 (-) True G487538
TU554093 lncRNA downstream 44240 23673929 ~ 23674146 (-) True G487529
TU554045 lncRNA downstream 123403 23594705 ~ 23594983 (-) True G487504
TU554126 lncRNA upstream 8473 23729308 ~ 23729536 (-) True G487553
TU554216 lncRNA upstream 118927 23839762 ~ 23839997 (-) True G487620
TU554224 lncRNA upstream 137027 23857862 ~ 23863007 (-) True G487628
TU554255 lncRNA upstream 193531 23914366 ~ 23915175 (-) False G487650
TU554254 lncRNA upstream 193579 23914414 ~ 23915707 (-) True G487650
XR_005052044.1 mRNA downstream 556 23713951 ~ 23717830 (-) False LOC110525552
XM_021605763.2 mRNA downstream 556 23713955 ~ 23717830 (-) False LOC110525552
XR_005052043.1 mRNA downstream 8158 23706557 ~ 23710228 (-) False LOC110525551
XM_021605759.2 mRNA downstream 8171 23706557 ~ 23710215 (-) False LOC110525551
XR_002473771.2 mRNA downstream 8172 23706557 ~ 23710214 (-) False LOC110525551
XR_005052045.1 mRNA upstream 9165 23730000 ~ 23750837 (-) False LOC110525554
XM_021605766.2 mRNA upstream 9166 23730001 ~ 23750829 (-) False LOC110525554
XM_036979680.1 mRNA upstream 11177 23732012 ~ 23750838 (-) True LOC110525554
XM_036979684.1 mRNA upstream 36969 23757804 ~ 23772857 (-) False LOC110525555
XM_036979685.1 mRNA upstream 36969 23757804 ~ 23772897 (-) False LOC110525555
TU554111 other downstream 603 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 132832 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 132832 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 326324 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 332479 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 632698 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 940062 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 985736 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1385370 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1776128 25496963 ~ 25497489 (-) True G489511

Expression Profile