RNA id: XM_021605766.2


Basic Information

Item Value
RNA id XM_021605766.2
length 3407
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110525554
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23730000 ~ 23750838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATTCAGGGTTCCAGGGACGTTCACATTAGTGACAGGATGACGCGACGTGAACATCGTGCTCTCCCTCATCACTATGATTTTGGTTACGCGTCTGCGCGCGCCCTGCATCAGCGGCCGGGCCACATAGCAATCAGGTGGTAAAATGCAACTTTTAAGGATAGCTTTTGAAGGCAGCTATGGTGTTGTTGTTACCTTACAAGGGCCGACAATATGAGAAAATGACATATTTGATGGGTAACTAAACGGCAATGAGTAGGTTAACCGGATGAAACGAGACTAGAAGCAAGACAATCATGAGCTCCTCTTTTCCCAAATCCGAATCCAAGACCTCATTGCTGAAATCTTCCTCGGCAAGCGGAAGATCGACACACTTCCCTGAACGTACGACAGGAACCGACcgaaatcatcatcatcatcaccaccgtCCAGCTGCAAGTCAAGTGAGCAGCAATGCCGCAGAGGAGTCTTTCTGGTCGGCAGAGTGCGACGTTACTGCGAGGAGACCCCTGTGCCACCCTTCGCTCCTCGGTACCCGGAATAGGGCGACGACCCGAGCTAGTAAGAGCCAGCCCCACGCCCCACATGGCAACGTTCCCGCCGCCCACTCCCAGGATGACCCATCTGAGCAACATGGTGTGGTTCGAGGTGTGAGAGAACGCTGCAAGTCATCCAAGCATCACCGACACCACCGGAAAACGACCCGGGACGACCAGCCAGCTGCACAACACCACAGCCACACTCACCCTACCCGTTTAGACCCCAGAATAGGCATGCAGCCCCACTCAGACTGCAAAGACGACACCGCGCTCTTGTTTGAATCGAGGGACCATACAAGGGCCAGTTCGTCTGCTAGCGTGGATGTCAGCATCCCGTCCCCAGCTTCCTCCTCGCCTATCCCCGTATCCAGCCGATCCTCTCACCGCTCTCGAAGGTCCAGCGCAGCATCTTGTGAATCTGACTTTTTGCGGCCAATTCTCAACTCGGTTTTTGGACAGGACAGAGACCTGAGGCCAGAGGAGATTGATGAGTTGCGGGATGCTTTTAAGGAGTTTGATAAGGACAAAGATGGTTTCATCAGCTGTAAAGACCTGGGAAACTGTATGAGAACCATGGGATACATGCCTACTGAAATGGAGTTGATAGAACTGAGCCAACAGATCAACATGAATTTGGGAGGTCATGTTGACTTTGAGGATTTTGTGGAGTTGATGGGCCCCAAACTTCTCGCTGAAACTGCAGATATGATTGGTGTAAAAGAACTGAGAGATGCCTTCAAAGAGTTTGACACCAATGGTGATGGAGCGATAAGCACATCTGAGCTGAGAGAAGCCATGAGGAAGTTGCTGGGACAACAGGTTGGCCACAAGGACTTAGAAGATATCCTGAGGGACATCGACTTGAATGGTGATGGGCATGTTGACTTTGAAGAGTTTGTACGAATGATGTCCCGCTGAGAGGAGGAATGGTCGATATGGCTTCAAGTTAATTATTCTGAATGTGAACCTCGGCCCCTTTGTCATCATCATTGAATGAGCAAAACGGAATAAATACTTGGACCTCTGAGCTATCTTTTCCTGAgaaaaactggaattaaagccctTACCTCTAAGTAGAAACGGAAGACCACGGTACTGCTCAAAATAGTGTTCTTCCCTAAAAGCCCCACATTCCAACTTAGACAGGTTCTACTGTAGCTTACAGACTGACCCGCTAATGGTTTCCACACTATTAACCCTCCACGAACTGTATACACTTGTGTGTAGCCTGCTGTTTAGGCAAGTTTTGTTTCTCAACCTTTAAATGGCAATATTTCTTGTGACTACTGATATGTTCTTCAAGTTTGGGTAATAGAGTGAGAAAAGCAGAGAgtcttatttgtgtgtgtgtttgtcactgtGATCTTTTGTGAGgtgatcactgtgtttacccagCACCATAAATGCACCAGATCCTCTCTAATGCACTGGGTTTATGGGACAAGCAAGAGCTAAGAGGACCTCAGCAAACACGCTTTTCCCAGATCTGGAAAATAGTAGCTTTTCTTCACATTTGTGTGCAGTGCATAAACATGATGGTTTATGTGTACagtatcctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtacagtttGACAAATAAATTGCAGAGTCCTAGTTTGTCATTGTGCTGTTTTTATGCATGCCAGAGACAAACCTAATTTTAAATATAGTATTATCTGTATGGGTGTGACAGTAAATGTAATACATTGTCTAATGTATAAAGTAGGCCACGCAATCTACTAAAAATAAATGTCTACTTGTGAACCTGTTTTTCCAGTGTTGCAATAAGTCCCAGGGAAATAGCTATATGGTGTGAAGCCAGGAAAGAAGAGACAGATTGAACTATTGCAATACCAGACAAACATGTAAAGGGCCCATACTAGGGGCTTCTGTGAAGTGAAGAAGTGTCTCACAAGGACATTGGACTGACACATCAAACCTTCTTTTTCATTTTTTGCATATGGATAAACAATACAGAGCAATAGGCCTAGACCATTCTGGGCTCAAACAATATCAACATTTAAGAAAATATTCAAATAGATATGGCTAAAGGCCGACCTTGACAGAACAGAAATGATTTGTAGACTTCAGTTACTAAAGAGACGTTTTCATGGTACCAGGACACAACAATGGTGCGcgaatgactggctggctggaacAGAACAAGTTGTCATGGCAACTGTCTCGCTCTTCCACCTGGATCCGCAGGAGCGGCGCAACATCTCTCTTCTTTGTTCCCTACCGTCTGTCTGGACATGACCCAAAATCCACACGGGCTCCATCGTGTGGTAAATGTCTAGAATACATTTTGTTTTGAGTTCTTGATGTTCTCAATTTTCGAAACTCAAGAGATGCACGAGATAAAACTGTCTAATCGTTAGCATACAGCTAGCTACAcagcactttaaaaaaaaaagtcaggTGCAGGTTTCTTTCATCATAGTGTTCGCTGTATGCATATTGTGTGTGAATTGTGTTGTGTGTATTGCTGAATTGTCATCTGTTGATATGATTATGTGGGCTACAGGTTGTGTTTTTCTAGTGACAACATATCGGCATGGTCTGTGGTTGATCAAAACCCATGGCACAGTTTCTAAACCAGTGGTCACCAATTGTTCGATCGCGGCAGACCAGGGAGATTTGTGGCTAAATCGAGTGCGCCTACTCTGCTGGCCAATCGGATAGCTCACATCACCGTGCCTACAAGCTTCCAAGACAGGAAGACCCCGGCGACAGAAAGTTTGATACTAGCCAGCGTGAGAATTCATAACTTTTACAACCATGTTCAGATAAATACTTTTAAAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554126 lncRNA downstream 465 23729308 ~ 23729536 (-) True G487553
TU554113 lncRNA downstream 9166 23718386 ~ 23720835 (-) True LOC110525553
TU554118 lncRNA downstream 19871 23708018 ~ 23710130 (-) True LOC110525551
TU554119 lncRNA downstream 25742 23703534 ~ 23704259 (-) True G487546
TU554106 lncRNA downstream 30486 23697218 ~ 23699515 (-) True G487538
TU554216 lncRNA upstream 88933 23839762 ~ 23839997 (-) True G487620
TU554224 lncRNA upstream 107033 23857862 ~ 23863007 (-) True G487628
TU554255 lncRNA upstream 163537 23914366 ~ 23915175 (-) False G487650
TU554254 lncRNA upstream 163585 23914414 ~ 23915707 (-) True G487650
TU554260 lncRNA upstream 177063 23927892 ~ 23928124 (-) True G487655
XM_021605765.2 mRNA downstream 1022 23718380 ~ 23728979 (-) False LOC110525553
XM_021605764.2 mRNA downstream 2559 23718380 ~ 23727442 (-) False LOC110525553
XR_005052044.1 mRNA downstream 12171 23713951 ~ 23717830 (-) False LOC110525552
XM_021605763.2 mRNA downstream 12171 23713955 ~ 23717830 (-) False LOC110525552
XR_005052043.1 mRNA downstream 19773 23706557 ~ 23710228 (-) False LOC110525551
XM_036979684.1 mRNA upstream 6975 23757804 ~ 23772857 (-) False LOC110525555
XM_036979685.1 mRNA upstream 6975 23757804 ~ 23772897 (-) False LOC110525555
XM_036979683.1 mRNA upstream 6975 23757804 ~ 23779306 (-) False LOC110525555
XM_021605768.2 mRNA upstream 6975 23757804 ~ 23779720 (-) True LOC110525555
XM_021605771.2 mRNA upstream 63973 23814802 ~ 23832541 (-) True LOC110525558
TU554111 other downstream 12218 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 144447 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 144447 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 337939 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 344094 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 602704 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 910068 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 955742 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1355376 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1746134 25496963 ~ 25497489 (-) True G489511

Expression Profile