RNA id: XM_036979683.1


Basic Information

Item Value
RNA id XM_036979683.1
length 4049
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110525555
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23757804 ~ 23779720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgcAGGCCTATCATGTTGCATTCGTTCCGAGTTGTTTCTATGGGCTACAAGTCTAGCTTTTACAACTCTTTACACAATATTCTGTCTGCGATTCTGTGGTGATTTTATGCGATTGATTGATGACACGTAGGCAATCATGAGGGCATTAGAGGCAGGAATATTGGTGAAATTGAGAAAGGGGAAACGAGTGTGTTATGGATGGTTGTCCCCATTCCTGTAGGGTTTTTAAATATGACAGTTCCTCAAGACACGGCAGCAGACAACGAGCGTATATAGGCTATAGCTCAGTGGAGTGAACTATGTAGTTGTGCCAGAGCTGTTCTGTGGGAGCGTGCGGTCTCGGTGGACTGTGATCGGGGCTGTGTTCACTTGAGGAGATGGCTGTTCTGGCTGCCCAAGCAGGTTTGCCGGACCATTCTTGAGGCCAGACACTCTGAGGTATGTTGTCTGTCTGCATTTGTCTAAAATGAAaaagggagggagcagcacaaaTACCGCACAGCCAGACGCCATGCAGGGGGAGCCCTCCCCTCATCCCTGAGTGCTGAAACTGGAGCCTGAATGTGTCATCAGATAGTGTCAGACTGCATCCAGCAGGGGGGATGATAAGAGTTTATAGAAAGTAGCCTTTCAGACACCCTGTGGAAGATTTTCCTCTAAAATACTATTTTGAATCAGTCAGACAGATTTGGTCATTGACCTTCTCAACAGTAGTTTCTCCAGACCAGACCGCCAGGGGGTTTAGCGAGGAGCCAGTATGGAGTGGTCACTAGAAAGGGTGAGGGAGATGGTGGCTGGAGGGATGCAGTCTATGAGGGACTGTGAGTCCAGTGCCTTTGGCACAGCCATGTGCCTGCTGCTGCTCTTTGTGTGGTACTGTTACAGGGTAGGTCGTGAGCACAGCTCCTCTCCCCTGCGTGGGGGGTACAGCAATGAGCCCAGTCGagtaggagggggtgggggggcctTGATCAGCACAGATGGGGATGGTAGGGCAAAAGGCAGGCCAGTGTCAGGGGTGGAGGAGCAGAACGGCTTTGCTTACTGCCAGTCCACTGAGTGTTTTCGCTGCACCAACACAGGGGAGGGTCTTAATCAGAGGCTGTACCACAGCTTGCAGGATTACGCCAAACGCTACACCTGGTCGGGCATGGGCAGGGTACACAAAGGGGTACGAGACCAGGGCCGCTACCTCACCAGCCGGCCCACCATCCAGAGGCCAGAGGTGTTCTTCCTTCCTGACCTGCCCTCAGCACCCTTCTTCTCCCGGGACGCACAGAAACACGACGTGGAGCTGCTGGAGAGGAGCTTCCCTGCTCTGCTGGCTGAGTTTGAGAACATCTACCACGCCCCCCCAGCGCGGGCTGGCTCCTCCCTGCCTCCGGGCTGGAAGGCCAACAGCACCCCCCATGGCCAGTGGTGGACCTTCTACCTGGTGAACCAGGGAACTCCGCTGGCCCTGAATGCCAGGAGGTGCCCCCGGGCCTGGAGGGTACTGGGCCAGCTGCGCACCTTCATTGCCAACAACGTGTTTGGAAATGCCTGCTTCTCTGTGCTGACCCCCGGAGCCCTGATAACTGAGCATTACGGCCCAACCAACGTCAGGCTGCGCTGCCACCTGGGTCTTAGAGTGCCCTCTTCCTGTGAGCTGGTAGTTGGAGGGGAGCCGCAGTGCTGGTCTGAGGGGAGCTGTCTGCTGTTTGATGACTCCTTCCTCCACAGGGCCTTCcatgaggGCAGCCCAGAGGACGGCCCCAGGGTGGTCTTCATGGTGGACCTCTGGCACCCTAATGTGGCAGCTGCTGAGAGGCAGGCTCTGGACTACATCTTCACCCCTGGACGCTGAGCAggcggtggggtggggtgggggggagaggaagagagacagagctaaagagagaaacacagagaggtaaagagagacagagaatgtgtCAGAATTTAAGAGAGAGTTGGTGAGAAAAGAACACTGTGAGTGAGGTGAGACATCTTCTTCTTTGTCTCTTGTTCCGTTCCCACACTCACTGTGTACATATTCTCTGTCTTGTTCGAATTGGCTCTCTCCCTGTAACTCTTAGCACCTACTGACTTTGACCAAACAGACGTAATGTAAAATGTTACATTTGAATGTTTACAGCCCCAATCCTTATATCTGTGATTATTCCTGCCCATGTGTGATAGTTTACTGTGCTCTCCTTTAGAAATCAATACAGCTTTCACAAAAACAGTTGGATAAGCAcatggaaaatgttttttttagaaATCAAATTATTTGCTAGAGACTGCCTGTGTTGCTACACAGGAGAAATGGTTGTATTTGCAGTAGTGGAGaaatcactgaggaagccagaaaaaaaagccatattacaacctatgtgttgtgataactgcgttgtttgctctgtaacctgttaattcatatgccttgcgacTGTGTTATATAGGTCTAAAgaccgagacaataagaagacagtggcagaataaattcaaccacctttgttttatcacaaaacccggatagcaacctctgtccggtttagtccacaaagcatattgcatgtaacagacatgacctacagcatggtcaaataagttaatgtttctgactattccagcaccatttcaacttcaacatttcaacatcatcaaatcacctctgcttagtctaatacgcTGAACTAAaaaataccaaaaacaatttagtccaatcaacgtaagctaaacatgatgtggctgtccatggatCTAATTTATTTGTGCGTGTGCGCATTTGTGCAAGTAGAATAATATGTTGACTcgccctacttgtagagaaatgccaatgccatcctcctctttcatttTGACGAAACGGTCTATCATACAGTACAcggttttattttttgttgtcctaggctagcTGTCTAAAATGCATGCtggcctaacttccattcatgggcaatgttagctagataacattagtcttctacatctagctacatgttgaactaaCATTCTCTCTCAGGCCAGGgtcacaacaatgtatgaatgaaTGGTCAGAAtgccgttataatcattggccagtacagagaattaagtaaaacaataagtccaaatccctatcgccatccatggctaatttaggaaacggaaaactttagctagctagctagtcactggaagacaacaacacacaacgagatgcaacaattcaactTGTTTCTATCAATGATGTATGCTCTCAATGCGATTTGATAGTAGTGACGCCAAAATCCAAGCTGACTTCAAttgacacttttttgggggggtgcgCCAAGACAGTTTAGCTCAACGATGAGCaactagttttttttatttttatcaagggaggccaaatgctctcAGGCGTTCCTTGCTTTCCATTCAATGCTaggggcggcaacaatgtcattcATCTATCTGATGCTGGCTGTCGTTGGGACCAGACAGAATCAGATAGATGGCATACATGTAGAGcgacagagggggcgctgtttcgtTTGTTCGGATGCTTTCTCCTCTGAGATACATTTAgacttgcgaattgaaggaaaattatgaaaccgAGAGATGAATGCTAAATGATTTTATGTTATTTtcttgatacatttttttggggagcttggcttcccttgacatccatgaatacacgccactgtgTATTTGGTAAATTATCTAATTAATGGTTGTAATATTGTTGGTTGTATTTGATATCAACTTTGTATTTATGTAAATAGAGTTGGATTACAAAACATATCTGAGAGGTTTTGAAATATAATTGTCTTACAATCGGTAGGTATTGTGTGGTCTTAATTTACTGGTACTGCATTGTCATCTTCTCTCCCGAGTATTTGTCATTTTGAGACATTCATTTTTAGATATTTGAAATGTTTATCAAGTGGTTTGGCTATTGTTCAGTAACATTTTATACCATTCTGTGATTTTTCAGCTGCATATCAAATGTTTGGTGATATTCTTCCCCAATAGTCATATTTGTGGCATTTGTATTCATTTTGAACAGTATTTAATAAATGGCAAATTATCTGAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554126 lncRNA downstream 28268 23729308 ~ 23729536 (-) True G487553
TU554113 lncRNA downstream 36969 23718386 ~ 23720835 (-) True LOC110525553
TU554118 lncRNA downstream 47674 23708018 ~ 23710130 (-) True LOC110525551
TU554119 lncRNA downstream 53545 23703534 ~ 23704259 (-) True G487546
TU554106 lncRNA downstream 58289 23697218 ~ 23699515 (-) True G487538
TU554216 lncRNA upstream 60456 23839762 ~ 23839997 (-) True G487620
TU554224 lncRNA upstream 78556 23857862 ~ 23863007 (-) True G487628
TU554255 lncRNA upstream 135060 23914366 ~ 23915175 (-) False G487650
TU554254 lncRNA upstream 135108 23914414 ~ 23915707 (-) True G487650
TU554260 lncRNA upstream 148586 23927892 ~ 23928124 (-) True G487655
XM_036979680.1 mRNA downstream 6966 23732012 ~ 23750838 (-) True LOC110525554
XR_005052045.1 mRNA downstream 6967 23730000 ~ 23750837 (-) False LOC110525554
XM_021605766.2 mRNA downstream 6975 23730001 ~ 23750829 (-) False LOC110525554
XM_021605765.2 mRNA downstream 28825 23718380 ~ 23728979 (-) False LOC110525553
XM_021605764.2 mRNA downstream 30362 23718380 ~ 23727442 (-) False LOC110525553
XM_021605771.2 mRNA upstream 35496 23814802 ~ 23832541 (-) True LOC110525558
LOC110525220 mRNA upstream 70704 23850010 ~ 23855515 (-) True LOC110525220
XM_021605777.2 mRNA upstream 109348 23888654 ~ 23894671 (-) False LOC110525561
XM_021605778.2 mRNA upstream 109348 23888654 ~ 23894681 (-) False LOC110525561
XM_036979689.1 mRNA upstream 109348 23888654 ~ 23911739 (-) False LOC110525561
TU554111 other downstream 40021 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 172250 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 172250 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 365742 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 371897 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 574227 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 881591 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 927265 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1326899 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1717657 25496963 ~ 25497489 (-) True G489511

Expression Profile