RNA id: TCONS_00031995


Basic Information

Item Value
RNA id TCONS_00031995
length 4017
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_016220
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13184227 ~ 13216269 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTGACGTAGCGCAGGAAACACCTCTCTGCTATGAAGGGGACAGTCTGACTCCATCTGAAGCAACTGCGCTTAGCAGACGCCTGTGAACACAACTTAGACAGCAAATCAGCGACATAACTGTCATCCGTTTAGCATTTAAGTCTACATTCGACAGTACGCCACTGAGAAATTCGTTCTTCACACTGCTCCGTGCGAGACGAAACTCACAAGTGCGCCCGAACATCGGTGATCTGCATCTTCCGTCTCACGCACCTCTGGACTCTAACAGGGATAAACGATGTCTTACCGCGCGCGCAATTTCCACCCGAAACACCAGAGACTTTCTTACCTATGCTTTTAATgcgtgttttttatttttattctgaaaTTAAGGAAGATGCTCACATCCTCTGCTTAATGTCAGGCATCACTTCTCGGAACAGAAAGTGGGCGTTTTTCTACAACCGAAGGATTCATGCGAGCGCTGCAAGTTCGCTGTTTAAACGATAtacatgttaataaaataattcgCTTTATTGCTTTGATGTGAAGAAAGTGATGCTGAAGATGCGTCAGGGTAAATAAGAACGCAGTGGTAGGCTACTGATATATAGCCTATATGGCACAGGAGAATGTGTATAATAACCGCAGTATAGTGGAAAATTACATCCACCATAAGCTGTGGAAGAAGGGATACGTTTGGGAAGTGAATGGACATGACAGTGTCTCGAATGGACTGAGTATGGGGAGGCAGGAGAACAGCGTCGTCTCTCCCAGCTCCCGTCACGACCCATACAGCGCTCTTCATAACGTGCTACGGGAGGCTGGGGATGAACTGGAGAGTTTATATCAGTCGGACTTTGCGGAGATGTCCAAACAGTTGCACGTCACGTCCATCACGGCACATCAGCGCTTCAACGCAGTCATAGATGAGCTGTTCAGGGACGGCGTGAACTGGGGCAGAATAATCGCTTTTTTCGAGTTTGGGGGCACCGTTTGTGCTGAATGCGTGAATAAGGAGATGACGGGGCAGGTGGATAACATTGCTGTCTGGATGGCAGACTACCTGAACGGGCCGCTTCACGGTTGGATCCGGGAGAACGGCGGTTGGGAAGCATTTGTGGAGCTCTACAGCAGCCAGAGGGATTCTGTGTTTCACAGTTCATGGTCATCAATAGTAACGGTCTTTGGTCTAGCTGCTCTCGGGGCTGTTGGCTTGACCATAGGAGCCTACCTTGCTCAACAATAAGGAACCTTCTGCTTCTTCACACGCCTTCCCTCTTTTCTATCGATTCAACACTCTCTGTGCTGTCAAAATTCCATTCTCTGCTTTCCCCAAAAGACATTCATGTCCCAAGACTGATCCTCTATAAAGCCTTGCTCCCACTCTTTTCAAGTCTTTCTTTCCCACTTTATTTCAAGTCTCTGCTTTCAGaaagtcagaaaaaaaaagaaaattaatgcacAGCCGACACATAATGAGAGGTTGGCAAAAAAGATAGACAAAAGGTGAAAGACACTGATGACATTGTTTAaattaattcacattttaaataattttgagtGTAGTACATAACAGACTTACTGGATTCCTTATATAAATATGAAGATGATTATAAAGATATAATTATCTGCATGAAGCATCTGCACTAAAGTAGATCCTggttttttaaacaagtcttgtTTTTTGTAGGATAGTTTTATAGTGTATGAAGAAAAAGAAATAGTGCAACTGTTAAGGCAGTTGTTTAGCCGATAGTGTATGTAAATGTTTAGTCACAGTATCCCTTGCACACATGGCAATTTTGATTTGATTATAGTCGACTCTGCCGCGATTGCTCATCTAAAAAAAGAATGCTACCATCAAAACCACGGTCCACACTAAAAAAAGTAGACTGAGACCACTGGACAGTTAATTCTCTAATCACTTCCAAAGGACTCTGCTGCAGTTAAAATGAAGTATGAATGGATCATGGAGTTAAGACAACTGATGAGAAACTAAAACCGGACAAGATTCACCATCAAAAAGGCAGAAGGCTTAAACCATCTTTAAACATCTAATGCAACACAGAAAGTTCAAAACAAACAATGTCcaaaaaaggaaccaaaaacctTGTCAAAATATTCAATGTGGCTTCAGTTATTCAACTCTAATCAtgtgaagctccaagaacatttctgtgtatcaaaaaaaaaaaaaaaaaagaaattccacAATTATTATGGGCGATTTGACGTTTGCAGTTGGGCTGCTGACTCTAATGGCAATACTTACTAAAAGCACAGCCCGACGACCTGCCGTGGGAGAAAAGGTTCATCATTACAGTTTTTAtaattacaattgaaccactgaaCTTACATGGGATGTTTTGAAAATAGTCTTGATTCCTTTTCCGGacattgaacatctctggactgctgtctatggaggatgaggtaCCTTATATCTTAATTTTTGCTCAGAAGATAAATGAAGGTCTGAGGagggttttaatttttaattaagggttttttattttattagctctTCACAAGTTTTCTGGTGATAAAAACACCATAACGTGTGTATACTGTGTATTGTCTTTAACCCAGCATACAATATTGTTTTGAATGTTCAGTAAGTTCTGTCACATAAAATTTGACCTAAAGTATCACATTGTAAACACTGAGCAAACCAGGACCATTGGTGCATTCACATCATGTTGTGGTTACAAGATTAGTAGCATTCTCGTGGAAATTGTAAATAGAATTTGTAAACTAGAAGCTTTTAGACAGCTTATTTAAGTTTCTTGTACCATCTGACTGTTCTACCACTTAACCACTAAAGAATTTAGATTAATTTAGGGTGCTATGATCAGGTGTTAAGAGTTGCATACACAGATATGCATAACTTTAAGTCAGAGAACATTAAACAGCCCAGAAGAGAATAGTACGTCTTTCAGGTACATCCCTCAAACATCTCTCTTCAGAATGTGACAAGCACACCATGTGTCATGATAAGAAACAAAAATCATCTTCACGTTTGGAAATATTCTACATATTTTAGCACTAATTAGAAATTCAGAGCACCTAATGTCAGTCACCTAAGCAATTACATACATTAGCTTTTGAAAATATTACTTTGTTTGATTTATTCAGTtacaaaatatttgttaaatgaatttaaatgtaaataaattgtatacATGAGTAACTGTAATAGGATGTAATAGGCTATTAAGGACTCTATTTAGCAAAACCAAATACAATTATCCAAAACTAGCTGAATTATATAAACCCAATGCACTTCTTCCTGtttattcattttgattttagtggaacaaatgaaaaatacaatatacaatacaGATCGCAGATGTCCTTATACACAAAGAATCCCAGCTTCAGAAGAGGCAACAACAAAATGTCCatgttgtaaataaaacaaatattagtaATTGATTTTACTTAGTCATTTGTGATGTATAATggcaatttaaattaaaacaccATATTTCATGTGGTATATTTCATGTGGCTTGAGCCGCATGCGTTTCATTCTGCATTCTTCATTTGTCATTCTGACAAAATGTCTTAAATCAAATATATTCTAAATGCTTTACTGTAAAACATTGaattaataagaaatgttttcaATTAAACTAAGTTATGGTTTTAGGGGGTCATCTGCTAGTGGCAAATAATAATGGCTACCAAAATATAATTATAGTTTAGCTTGACATAAGCAACAAACACTTTCTTAACCTATATCAAGATGtattctataaaaaaaaacagtcttaaCCAGTCATGTTTCTCAACTACATTTAGGGATTTTACACAACACTGAAATAATTAACACTTTAAAACAGGTTTCAAAGTAAAAGCTATAACTTCATGCATTTTAAAAAGTTCAATTATATATGCCCTTCGAAAAGCTTTTAATAtggatttaaatattattattcaaccCACATCAGAAAATAGTTTGTGACGCACTCCAAATGAAACTGAACaaatttgtaaattatattaataaattagcagtttctttgta

Function

GO:

id name namespace
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process
GO:0097458 obsolete neuron part cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-110411-185 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in extrinsic apoptotic signaling pathway in absence of ligand; intrinsic apoptotic signaling pathway in response to DNA damage; and negative regulation of intrinsic apoptotic signaling pathway. Predicted to act upstream of or within apoptotic process and negative regulation of apoptotic process. Predicted to be located in endoplasmic reticulum membrane; mitochondrion; and nuclear membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; carcinoma (multiple); hematologic cancer (multiple); intracranial aneurysm; and prostate cancer. Orthologous to human BCL2 (BCL2 apoptosis regulator).

Ensembl:

ensembl_id ENSDART00000149947

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031994 lncRNA downstream 363771 12819999 ~ 12821531 (-) True XLOC_016219
TCONS_00033780 lncRNA downstream 480918 12703957 ~ 12704384 (-) True XLOC_016218
TCONS_00031986 lncRNA downstream 1203997 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00033352 lncRNA downstream 1206708 11977036 ~ 11978594 (-) True XLOC_016213
TCONS_00031984 lncRNA downstream 1418098 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00033782 lncRNA upstream 334298 13550567 ~ 13561727 (-) False XLOC_016224
TCONS_00033783 lncRNA upstream 334298 13550567 ~ 13573442 (-) False XLOC_016224
TCONS_00033784 lncRNA upstream 334298 13550567 ~ 13573898 (-) True XLOC_016224
TCONS_00033785 lncRNA upstream 455843 13672112 ~ 13673864 (-) True XLOC_016225
TCONS_00032005 lncRNA upstream 567124 13783393 ~ 13784508 (-) False XLOC_016227
TCONS_00031992 mRNA downstream 552541 12406713 ~ 12632761 (-) False XLOC_016217
TCONS_00031993 mRNA downstream 682807 12406714 ~ 12502495 (-) True XLOC_016217
TCONS_00031989 mRNA downstream 942089 12104389 ~ 12243213 (-) False XLOC_016215
TCONS_00031990 mRNA downstream 942607 12154840 ~ 12242695 (-) True XLOC_016215
TCONS_00031987 mRNA downstream 1105584 12019341 ~ 12079718 (-) False XLOC_016214
TCONS_00031996 mRNA upstream 7486 13223755 ~ 13254821 (-) False XLOC_016221
TCONS_00031997 mRNA upstream 8751 13225020 ~ 13254594 (-) False XLOC_016221
TCONS_00031999 mRNA upstream 39717 13255986 ~ 13268556 (-) False XLOC_016222
TCONS_00032000 mRNA upstream 39717 13255986 ~ 13268564 (-) False XLOC_016222
TCONS_00032001 mRNA upstream 40855 13257124 ~ 13333991 (-) False XLOC_016222
TCONS_00031991 other downstream 960763 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 1522379 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 2280123 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 3437871 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 3438309 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031998 other upstream 35883 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 1778124 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 1812377 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 1885834 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 3292555 16508824 ~ 16512422 (-) True XLOC_016264

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_02143355_02186281.mRNA True 2642 mRNA 0.45 9 CI01000004 2142676 ~ 2186771 (+)