RNA id: XM_021605782.2


Basic Information

Item Value
RNA id XM_021605782.2
length 2186
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC110525566
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23970088 ~ 23972273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCGTTGCACCACTCACTCATACTGCCTGTGCTCTCCTCCAGTGACTGATGGGGACCATTCCTTAAACGTGACTTTTTTTCTAGTTTTCAGTGTTGACATTTGGTTTGTTTGAATTTTACTCAACCAGCTCTGGACTGTACAGAAAGGATTTTAAAAGTTTGAAATTATTTTCCATTTCATACTCATGACTTGGAACATGGATCCCACTGTGGAGTATAGAGATACCTATGATTATGATTATGGTGACAACGAAACTATGTGTGACTACTCTGAGTGGGAGCCATCCTACTCCCTTATCCCTGTCCTCTACATGCTCATCTTCATCCTGGGCCTGTCTGGGAATGGAGTGGTCATCTTCACCGTCTGGAGGTCCAAGTCCAAGCGCCGAGCAGCAGATGTCTACATAGGCAACCTGGCCCTGGCTGACCTCACCTTTGTGATCACTCTGCCCCTCTGGGCCGTGTACACAGCACTGGGCTACCACTGGCCCTTTGGTGTGGCCCTGTGTAAGATCAGCAGCTACGTGGTGCTGGTCAACATGTACGCCAGTGTCTTCTGCCTCACCTGCCTGAGCTTTGACCGTTACCTGGCTATCGTCCACTCTCTGTCCAGCAGCCGGCTGCGGTCGCGGGGCACAATGCTGGCCTCCCTGGGGGCCATCTGGCTCCTCTCAGGCCTGCTGGCTGTGCCCACTTTGCTGTTCCGCACCACCGTGGACGACATCAACAGCAACCGCACCACCTGTGCCATGGACTTCAGCCTGGTCACCCTAAACGAGAGGCATGAGTCCCTGTGGATCGCAGGACTCAGCCTGTCGTCCTCTGCCCTGGGCTTCCTCCTGCCGTTCCTGGCCATGACCATCTTCTACTGCTTCATCGGCTGCACCGTCACGCGTCACTTTAACAACCTGCGCAAGGAGGACCAGAAGAAGCGTCGTCTGCTGAAGATCATCACCACCCTGGTGGTTGTATTTGCCATCTGCTGGACCCCATTCCACTTGCTGAAGAGCATGGACGCCCTCTCCTACCtgaacctgtctcccagctcctGTGGGTTTGAGCGCTTCCTCCTGGTGGCCCATCCTTATGCTACCTGCCTGGCTTATGTTAACAGCTGCCTCAACCCCTTCCTGTACGCCTTCTTCGACCTACGCTTCCGCTCCCAGTGCCTGTGCCTGCTCAACCTGAAGAAGGCCATGCATGGACAGATGAGCTCCATGTCCTCCACGCTCAGCGCCCAGACACAGAAGTCAGAGATACAGTCTCTGGCCACCAAAGtgtaaagagaggggagggataggTGGAGTGGGACTGCTGGCTGGTTCCCTGCTGCCACCACAGGAACACTGACTGGTAAACACACAGTTTTTTGGTGTCTGTTATTCAAATGCTTTTAAGGCGTAACAGACAATGAACAATGACTTTGTTTTCCGAAACATGGGTTttcatatacagtatgttttcatTCTTGTGTATATGTACATTTCTCACCCATTTCAACCCAACGGGTGCTTCAGTGGGTAGGGGAGAAGCCCAGGGAGTCCTACAAAGGTTCCCTCTAACCCCTGGACTGGACTCTGAAGCTGGGGAGAGTTGACTGAGCTCCATATAGCtgctttttttcccccacaacGTCTCAGAAAGGTAAATATACTTTTCAGACGGACTCTATTTTTCCTCTTCTCCCTGTTATTCTTTACTGTATAAGGGACCAGAGGGTTttttctgttgttgttatgtatGTCACATGCAAACCTGTTTACACTGGGTAAATCACAAATGTACAGTATTTTCATACTTTTGCTGTTTCAGATGTGTTGATATTTTGTTTTATTACAAGCACTTGTTAAATGAATGAAATGTAAAAGAGGGGAAAATGTGTTTGCAAAGAGACCATATCTTCTTCAGGTTGTTGTTTGTGAAGGTAGGAGACTGggcagaggaggggggggggggtgtaagaggAGGAAAGGTGTTGCAGCTTAATTACAGAGtttgaggaggagacaggggcagACAGGCAGATGGCAGCTGACAAATGTTGTCAGGGAAGTGGGTGGGGGCTTTACAGTGCCCTCTGGTGCCGGGGAGGAAAGGGGACTTCATGAATTTTTTATTGTATTGCATATATGCTTTTGACATCTGTGTAACTAACTACTGTATTAAATAAATATGATCTATGAAA

Function

GO:

id name namespace
GO:0038166 angiotensin-activated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004945 angiotensin type II receptor activity molecular_function

KEGG:

id description
K04174 APLNR; apelin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554291 lncRNA downstream 1434 23968449 ~ 23968654 (-) True G487681
TU554283 lncRNA downstream 12306 23957574 ~ 23957782 (-) True G487673
TU554280 lncRNA downstream 15920 23953876 ~ 23954168 (-) True G487670
TU554261 lncRNA downstream 40317 23929251 ~ 23929771 (-) True G487656
TU554260 lncRNA downstream 41964 23927892 ~ 23928124 (-) True G487655
TU554318 lncRNA upstream 45472 24017745 ~ 24018026 (-) True G487708
TU554271 lncRNA upstream 47299 24019572 ~ 24023100 (-) False G487662
TU554272 lncRNA upstream 47299 24019572 ~ 24022065 (-) True G487662
TU554421 lncRNA upstream 218977 24191250 ~ 24191474 (-) True G487795
TU554424 lncRNA upstream 222489 24194762 ~ 24195075 (-) True G487798
XM_036979693.1 mRNA downstream 21585 23943886 ~ 23948503 (-) True LOC110525565
XM_036979694.1 mRNA downstream 21850 23943886 ~ 23948238 (-) False LOC110525565
LOC110525564 mRNA downstream 52024 23915796 ~ 23918064 (-) True LOC110525564
XM_036979689.1 mRNA downstream 58349 23888654 ~ 23911739 (-) False LOC110525561
XM_036979690.1 mRNA downstream 58349 23888654 ~ 23911739 (-) False LOC110525561
XM_021605785.2 mRNA upstream 52273 24024546 ~ 24031999 (-) True LOC110525568
XM_021605783.2 mRNA upstream 59796 24032069 ~ 24041920 (-) False LOC110525567
XM_021605784.2 mRNA upstream 59796 24032069 ~ 24041920 (-) True LOC110525567
XM_021605788.2 mRNA upstream 87638 24059911 ~ 24071705 (-) True LOC110525572
LOC110525317 mRNA upstream 100341 24072614 ~ 24079048 (-) True LOC110525317
TU554111 other downstream 252305 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 384534 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 384534 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 578026 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 584181 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 381260 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 688624 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 734298 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1133932 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1524690 25496963 ~ 25497489 (-) True G489511

Expression Profile