RNA id: XM_021605792.2


Basic Information

Item Value
RNA id XM_021605792.2
length 6370
RNA type mRNA
GC content 0.46
exon number 11
gene id dtx1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24129400 ~ 24184369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATCCGCTGCCGCTAGACTGGTCTTTCTGTTAGGCCTATCTCTCTATAGCCTATATCCTATCTTGTCTCTTTTGTCGCTTCCCACAACGATGCTACTGAGGGTTGTGGAGCAACAGTCCAGTGTGCTGTTATGTGCACACCGCGTAGGCTTTTCTCCCATTGTCGGCTTGGGTCTACCGAATATAGCCTAATGAAATTCACGGGAAGCCCTCAGATCAAAGCGTTGAAGATGACCCATTTCATGCAATGATTTTAAAAATGTGTTGAATAAATAGGCTGATATAGTTTATTTAATTCATTTCCATGTTACCAATATGTTGCTGTTTTTAGAATAGACTGTTCACCGTCGTCTCATTTTCACTTCAGCGACGCAACATCCTCTGAATTTTCCACAACTCTACGCGATTACGCGCGTAGCCAAGAGGACGGTAGAGATTTGCATTACAGGTGCTCGTGGACCTTTGTGCGTAATTTTGGACCACTTTGCATGTTCAGTGTGAAGGAAATATTACAGGCTTGAATAACGCGTCTGTCCTGCATAATTGAAGACAACATTTAGTGTATATCCCATGTTCATTCTGCTGGGGTTTTCTGAGACTGCTCCGGCTGTATACTTTTGCAAAGCTCATCAGCATCAACATCTTCAGCCACTTCAAACACATCACGCAACAAGAGGAGGGAGCCTAGCTGCTTTTGGCATTTTAAAAAGACGCTGATCAAAGAAGAAGTCAAAACTGCAGTGAAGAAAACACCTTCAGTAAGACAGTGAGTTTCTTGAGTGAACCAGAAGACTCCACCGGACCTGTGCCCTGGAAACAACACCATTTGACTGAGAACTATCAGAGTGACTGCTGACCTCACAGTTGTAATTGTTGTTTTAAAAAAGAAGAAATGTGTGGGCATCTCTGGTGACCTGCTGGGTAGCAGTGGTCTTCTTGTGCTGTAGTAGGAGTGGCTGAACCACGATTACCATAGTGGGACAATGGCACGGCCAGGCTCTGGGGTGCCGGTGTCAGTCAACGGGCTGGGGTACCCCCCTCAGAACCTGGCCCGGGTGGTGGTGTGGGAGTGGCTAAATGAACATGGGCGCTGGCGGCCCTACAACGTGACAACTTGCCACCACATAGAGAACGTACTGAAGGGGGATGCGCGGGGGACTGTGGTCCTTGGACAGGTGGATGCCCAGCTTGCCCCTTACGTCATAGACCTGCAGTCCATGCACCAGTTCAGACAGGACACAGgcACCATGAGGCCGGTCCACAGGAACTTCTATGAGCCGTCGTCGGCCCCGgggaagggtgtggtgtgggagtGGGAGAACGACAGCGGCTCCTGGACGCCCTACGACATGGAGATCTGTGTGACCATCCAGAACGCCTATGAGAAGCAGCACCCCTGGCTGGACCTGACCTCTCTGGGCTTCTGCTACCTCATTGACTTCAACAGCATGGTCCAGACCAACCGGCAGAGCCAGAGGAAACGCCGCCTGCGCCGACGCATGGACCTAGCCTACCCTCTCATCATGGGCTCCATCCCCAAGTCCCAGTCTTGGCCCGTGGGAGCCAGCTCCGGCCAGCCCTGCTCCTGCCAGCAGTGCATCCTGGTCAACAGCACGCGGGCTGCCTCAAATGCCATCCTGGCCTCTCAGCACCGTAAGCTGTATGGGGGGGCTACCGGGCCTTCGGGGGCTACAGGCACGCTCACCGTGGTACGGCAGAGTAACACCTTCGCTGGAACCACCCTCTGGTCCCCCACCTCTAGTGCTGGGACCAATAATatacaacataacaacataagCGCAGGAGGAGGCCAAGCCAAAGCTGAACAGGTGCAGTCTCTCCTGTCTAGTGCCAACTTTCCATGTTCCCCGGCGCTGCCGTCCCTTCCGCCTGCACATGGCCACTCCCACGCCCACGCACACTCCCACGGTCACCATGCCATCATCAATGGGCAGAACAACCTGAACCGGCCGGGCACCCAGCGCATTTCCATGGGCACTGCCAGAGGAGCCATCCCACCAGGGGTCCCTCCCCTCCCTGTTAAGAACCTTACTGTCTCTGGACCAGTTCACCCAGCAATTGCAGGTATTACCGGTATCCTGATGTGTGCGGctggcctgcctgtgtgtctgaccAGGGCCCCTAAACCCATTCTGCACCCGCCGCCCATAAGCAAGAGTGACATGAAGCCTGTGCCTGGGGTCAACGGCATCCGCCGGAAGACCAAGAAGAAGCACCTCAGGAGAGGGAAAAACCCAGAGGATGTGGTGCGGCGATACACAGAGAAAGTGAAAGTAGCCCCTGATGAGGACTGCACCATCTGCAGGGAGAGGCTGGTGATGTCATCAGGCTACGAGGGTGTCAAGGGCATAAAGCCAGAGGTGGTGGGCAAACTTGGCAAATGTGGGCACATGTACCATCTGCTGTGCCTGGTTGCCATGTACAACAATGGCAACAAGGATGGCAGTCTGCAGTGCCCCACTTGTAAGGCTATCTATGGGGAGAAGACAGGCACACAGCCCCCTGGGAAGATGGAGTACCATGTCATCCCCCACTGCCTGCCCGGCTACCCAGAGGCCAAGACCATCCGCATCGTCTATGACATTCCTGCTGGCCTACAGACCACAGAGCATCCCAACCCAGGGAAGAAGTTCAGCGCTAGGGGGTTCCCTCGGCACTGCTACCTCCCAGACAATAACAAAGGCAGGAGGGTCCTGAAGCTCCTGATCATGGCGTGGGACCGCCGCCTCATCTTCACCATCGGCATGTCCAGCACCACGGGAGAGTCAGACACAGTGGTGTGGAATGAGATCCACCACAAGACAGAGTTTGGCTCCAACCTGACGGGGCACGGCTACCCAGACCCCAACTACCTGGACAACGTTCTGACAGAGCTGTCAGCCCAAGGGGTGGGACAGGACAACCTGAAGGActgagagggggggacagagaggccCCAGAGGACCACCTCCCATATCCATATCTGACAGGGCCTCTGAATGAGGAGGCAACATGCAGACCAGATAGCCGTCTTTTGCTCCCCACACCCAGAACAGACCTACAGACCCTCATGTTCTGTATGTGGGCAAACTAATATATAGCAAATGACATAATAATGACACGATAACGTCATGATTGTGTTATACTGTTATTTGCATTTACCTAAACATAAGTGTAAAACTTTTCCGACTGATGTCTCTTTGTCCATGCCTTGAGCAGGTGTGTTTTTGCCAAAATTTCAGCCTGATAGGTTAAAGGAATGTAAAGACAGGATTTAAAACTGATCTCATTGTGTACTGGCTATTGTGGGGTTTAGACATTGATGCACATCAACAGTCATTGATTCCTCTGAGACAGGATATTGAACCTCCTCTTCTGTACTAACATCATAGCATTGGAGGAGATGTCTGTTAATGTTCACCACCGAAACATATGGCCCAGAGTTTGCATTGAATGTTGACCGCATAACTGCGACTTTTGCTAAACAGTTGGCTAGGGCTCCAAAGGCTCTACATGTCTGGCCACATTTATTCCACTTTTTTCAGATGTGCATTTTTGAAAGAATAGGGAAGTGATTTATCAAGTTGTAGTTGGTGTTTGTGTGGAAATCTTCAGGAGAATTTTAATATGCAGAATTTACTTATATAATTTGAAAAGCATGGTTGCAATTACAGATCAGAATTGCATTAGTCTAATTCGCACCAAATCTACACAGTTGAACTTATGACATGCAGATGTGGTTGCTAGTGAGAGTCTTTTAAAAGTGAGGCCTATTGCTAGTTTTATCTTGGTGGTTTTCCACACCAAAGATGTCTGTAGATCTGAGGTGGACGGTCACGGCTATGTGATTCtcagaaaggagagaggacatgTCTGATTGGCTACACAGGGCTGTTTCACAGGGCTTTGCACCATTGGCCAATGAGTCTATTGATTGTTCAAATGCACCACCTGACAGAGAGCCAGtcagaggatctgaggacccagcCGTCTCACAGTAAATGTCTATTCTAATGGTGTGCCAACCAGAGCGGATGCCTTTGGAAGTGAAACCTGATATAGGTTCATACATAAGCGTCTAACCGACCAGGTAGATGTTTGTTAAAATGGTGTGCTCCTTGTTGATATTAACTGATCCATAGTAATGAGTGGAGATGTTGGTATAATCCAGAAGAGATTCTTGTTGAGGTTTTTATGGTGCGCCACCCATTTCACAGGGTTTTGATCCTTGAAATGCTTTTGAATATCTTGGACTGAATCATAGTCTTCCGTAGCACTTTTCTTTAATTAATCCTTTCGTTTTTGGAAGATGTCTTGAAATGTATTGGCTACTATAGctgctgtttttttattttcatgtttatAAACGTGTCTTGTATTgcttcaaatatatatatatacagtatatatctataCATTTGCAAATGTGATCTACCTTTTAAATGTACACGTATGCTCAATTTGAGTCATATGGTATaagtttaatttatttttatactCTTCTATATAAGAAAATAAACAGTCACATCTACCCGCccacatatctatatacacacagaaatatgtAAAATGAGTAGATCACATCTGGCATATGTGATTTGCCAGTATGTCAGGGACTGTTGAAATGTGTATGCTAGGTTATGAGCGTCTTATACTGTATTAGCAGTAGTCTTAGCGTTTGCTGCTGTTGTTAATGTAGATTCTCTGAAGTGGAGCCCCTGAGGGATTCAGTAAGTACAGCAGTTCCTCTTTATTATTGGCTGGGGGGAGTTTAGCAGCATGACGTCGACCCTATACCCCCGATGGGTCATTGACCATAGAATTCTAATTCTAATTCTGTTATTTACCTTGTATAACCTAAGAGAACCACTAGGAGGATACTGTCAGTACCTCAAACAGGTGAGAATGAAAAACAAGAGCCATTTGGTCTTTTCATTTCTTTTCATTTATTTTGCAAGTTGACACGTTAAGGTTTTTGTCACCCTCGTAATAGGGAAAAACATGAAAGAAATGATTTCAGTCTTATCAGGGAATTTTCCATTTTAAGTGAGACTCATTGAGTTGTACAGGGAAAATGTTTTCAGTTAATATTTCAAGACCAGATCATGCTCAGATTTCCAGTCTCCAAATGCTTTACATATGTACCTGTAATATGAATCAAATATTTCATTGTCTAGGACTCCTCCGCTTTTCAGGTGTGCACATACAGTCCGTATACTTTCAGTGGTCTGTACATGGGGAGCTTTATTGTGAGCAGACATTTTATGGTCTAGTTTTGGACAGAGGAATAGAGTTTATGCAATTATATATGCGACCAATTTGTACCTTAAGTGTAGCAGGAGGGATCAGGAGGTGTTGGGGACAGAAGAATGGATGTTCAACATTCTGTAAGGCGTGTCCATTTGTGACCAAAGGAGACAGTGATCCAAAGGTATAGCTCAAATGCTCCATATAGGACAACACATATATTTTTGATGTATTCTTTAAAAGATTGATTGGTTTAAATTGAGCATTCATAGTGTGCAACATTGTTATATTACAGTAATTAAAGACACATTCCATACGGTTCTCCATAGCATATATTGATTAGGTGTGGGATCCTTTCTCATGAGGTGTCACAATCATATTGAAAACATCCAACAGCGTATTGCACTTATCTGTGTGCACAGATATGCCTGCAacaaattggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaatgctTGGTTTAAGCTTCTAAAATAttcaaacagtagacatttgggggctgaaataaaaaaaaaatgtcatagaAGTGCATGTTACTCAAGACGTCAACAAGTCTGCTGACAAGGCAAAAATGTTCTAGGTGAAAAATGTTATGAAGTCATTAGAAATGTCATCGAGCTGTGTCCTGTGTGGACTGGCATGGTGGACTGCTCCATACTCCACTGTTTATCTGTGTGTTTTGATCTCTGAAGAGGGTTTGATGGAGAGAGCATGAAATAGCACTTTGctactcctctctctgtttcacatAAAAGGTCATCAGGTCATCATCTGCATTTTCAATGCCTATTTTATACAGATAAAATGTCAGAGAACAATGTGGTTATAGTTTAACATTCACATTTAATTTCTCATCAGAAGCAACATATTACATATAAAACATTCAATTAAACACACAAAGAGAAATGGAGATTTGAAGTGTAAAATTAAATGAATGAAAAAAAATAAAGGCAAGATTAGAGACATTGATTAAAGGGCTCTGAATCTGAACCAGTCTCTATTGGATTGGGATGATTTTGTtgcatgtttgtttgtttcatgTGGAAAATAAATGTGCCCTCAACGGGGTAGTTTGTTtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554271 lncRNA downstream 106300 24019572 ~ 24023100 (-) False G487662
TU554272 lncRNA downstream 107335 24019572 ~ 24022065 (-) True G487662
TU554318 lncRNA downstream 111374 24017745 ~ 24018026 (-) True G487708
TU554291 lncRNA downstream 160746 23968449 ~ 23968654 (-) True G487681
TU554283 lncRNA downstream 171618 23957574 ~ 23957782 (-) True G487673
TU554421 lncRNA upstream 6881 24191250 ~ 24191474 (-) True G487795
TU554424 lncRNA upstream 10393 24194762 ~ 24195075 (-) True G487798
TU554427 lncRNA upstream 13697 24198066 ~ 24198697 (-) True G487801
TU554431 lncRNA upstream 17553 24201922 ~ 24202251 (-) True G487805
TU554433 lncRNA upstream 20512 24204881 ~ 24205232 (-) True G487807
LOC110525317 mRNA downstream 50352 24072614 ~ 24079048 (-) True LOC110525317
XM_021605788.2 mRNA downstream 57695 24059911 ~ 24071705 (-) True LOC110525572
XM_021605783.2 mRNA downstream 87480 24032069 ~ 24041920 (-) False LOC110525567
XM_021605784.2 mRNA downstream 87480 24032069 ~ 24041920 (-) True LOC110525567
XM_021605785.2 mRNA downstream 97401 24024546 ~ 24031999 (-) True LOC110525568
XM_021605798.2 mRNA upstream 26775 24211144 ~ 24224236 (-) False ccdc92
XM_021605797.2 mRNA upstream 26775 24211144 ~ 24224260 (-) True ccdc92
XM_036979698.1 mRNA upstream 133543 24317912 ~ 24504123 (-) False ncor2
XM_036981738.1 mRNA upstream 373118 24557487 ~ 24566324 (-) True LOC118965019
XR_005052405.1 mRNA upstream 394336 24578705 ~ 24579373 (-) True LOC118965071
TU554111 other downstream 411617 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 543846 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 543846 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 737338 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 743493 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 169164 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 476528 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 522202 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 921836 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1312594 25496963 ~ 25497489 (-) True G489511

Expression Profile