RNA id: XM_021605797.2


Basic Information

Item Value
RNA id XM_021605797.2
length 1716
RNA type mRNA
GC content 0.51
exon number 4
gene id ccdc92
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24211144 ~ 24224260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCATGATGCATCGCCTTATTTTGTTGTAGCTGAGGGTGATAAGAAGACTGACACAGCCCATCCATCCTGTTTCTGCCGACAGAAGAGGAGCGTTTGGCGTCATCAACGATAACAATGCCTAACATGGCAGAACGGATTTAGCCACTGTAGCAATTACGACAAGAATTTATATATTAGAGAATATTCGACGATATTATCATATTTCTTTAGAGTCTCTAGGACTGGTGTGTGTCTGCTGCATTGTCTGCCATGGCATCCCACAATGGTACCCTGGAGAATCAGCTGCACAGCGCCCAGAAGAACCTGCTCTTCCTCCAGCAGGACCATGCCAAAACACTGAAAGGTCTACATGCAGAGATCCGCAGACTACAACAGCACTGCACAGACTTGACCTATGAGCTGACAGTGAGAAGTTCAGATCCAACAGaCAGCAGTGAGGCACGCTGCAGGGAACTGCACAGTAAGTGCGAGGAGCTGGAGGCTCAGCtaaaggtgaaggaggaggagaacacgGAGCTGCTGAGAGACCTGGAGCAGAAGAACGCCATGATCTCTGTCCTGGAGAACACCatcaaggagagggagaagaagtaCCTGGAGGAGCTGAAGATGAAGAGCCACAAGCTGGCTGTCCTGTCTGGGGAGCTAGAGCAGAGAGCCAGCACCATCGCCTACCTCACCTCTCAGCTCCACACCACCAAGAAAAAGCTCCTGGCAGGTAGTTCCTCCGAGGCCAGTCCTAACGTCAGCCCTGTGAGCTCCTACAAGCCCACCCCTCCCCCAGCTAAAGACCGGCAGCCTGGCCCTGAGACCCCTCGCCGCCGCATGAAGAAGAGCCTGTCTCAGCCGCTGCACTCTGAGTTAACCGAGGTATACCGGCTGGGTTCTGATGGGAGGAGGATGGTCCTACGGGAGGCGGTGGATGCCATGCCTGACCCCACCCCCTTCCTGCAGGCATCTCGAGACACCCCTGATCTGCAGATGGTACGAGACCGGCCTGCCGTCATCCCCCCCATCGCCTGTGATCGCTCGTCCAGCCCCCGCCACAGCCCGGCACGGGACCGCCAGCATCATGCACACGTGGGCGTTGCACACCGCACCCACCATTGCACCCCTCCCGTGGTGTCTCCTCAGCCAGAGCTGGAGATCCTGGCTGTGGACCAGGTCAATGGGGGCAAGGTGGTGAGGAAGCGCTCTGGGGCAGACAGAACAGTTTAACACATTCTCACACAAGCAAGAAGGAGCATCACCTACTGTATAAATCACCTGCTTTTTATGCAACACTGCAATGAGCAAAGAAAGTAAAATGGAAAACAGACAAAAATACCACCATGCCAAATGTTTTGAAACACATGTGACTTACACATCCTgtcctttttttgctttgtctcaTCTCACTCTGTCATACATTGTGCACATAAACTTATCCGCCAAACATCTGCATTATTGCCTGCTTACCTGGTGAATCCATACACATATTATCATCGTTAACTACCAGGGGTGAAAGTATAGTTTATTTCTTACCAGTGCGGGACTACAGAAATTACAGTCTACTTTGCTGACACGGACAAACGGATCAATAAAAACAATGTTGTCTGATCCATATAATTGGTCTACGAAAAGGGGAGACACAAATACAATATGACGACCATCTAACCTAGAGGAGGAAGTTATTgtccaaaaaacaaacaaaagtggcACTGACCCAATGACA

Function

GO: NA

KEGG:

id description
K16452 CCDC92; coiled-coil domain-containing protein 92

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554377 lncRNA downstream 1863 24207065 ~ 24209281 (-) True G487754
TU554433 lncRNA downstream 5912 24204881 ~ 24205232 (-) True G487807
TU554431 lncRNA downstream 8893 24201922 ~ 24202251 (-) True G487805
TU554427 lncRNA downstream 12447 24198066 ~ 24198697 (-) True G487801
TU554424 lncRNA downstream 16069 24194762 ~ 24195075 (-) True G487798
TU554446 lncRNA upstream 10542 24234802 ~ 24235048 (-) True G487820
TU554447 lncRNA upstream 10943 24235203 ~ 24235484 (-) True G487821
TU554452 lncRNA upstream 17594 24241854 ~ 24242060 (-) True G487826
TU555021 lncRNA upstream 88031 24312291 ~ 24314486 (-) True G488329
TU555088 lncRNA upstream 93652 24317912 ~ 24321755 (-) True ncor2
XM_021605790.2 mRNA downstream 26775 24129400 ~ 24184369 (-) False dtx1
XM_021605792.2 mRNA downstream 26775 24129400 ~ 24184369 (-) False dtx1
XM_021605794.2 mRNA downstream 26775 24129400 ~ 24184369 (-) True dtx1
XM_021605795.2 mRNA downstream 28727 24129400 ~ 24182417 (-) False dtx1
LOC110525317 mRNA downstream 132096 24072614 ~ 24079048 (-) True LOC110525317
XM_036979698.1 mRNA upstream 93652 24317912 ~ 24504123 (-) False ncor2
XM_036981738.1 mRNA upstream 333227 24557487 ~ 24566324 (-) True LOC118965019
XR_005052405.1 mRNA upstream 354445 24578705 ~ 24579373 (-) True LOC118965071
XM_021605809.2 mRNA upstream 373710 24597970 ~ 24634358 (-) False ep400
XM_036979699.1 mRNA upstream 373710 24597970 ~ 24634358 (-) False ep400
TU554111 other downstream 493361 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 625590 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 625590 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 819082 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 825237 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 129273 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 436637 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 482311 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 881945 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1272703 25496963 ~ 25497489 (-) True G489511

Expression Profile