RNA id: TU555088


Basic Information

Item Value
RNA id TU555088
length 3676
lncRNA type sense_over
GC content 0.45
exon number 2
gene id ncor2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24317912 ~ 24504123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTGGGGGGAAGCCAAAGGGTAGCGGGCGCTCTAACGGGCGGAAGGCCAAATCCCCCGGGCCAGGCCTGTCAGGGGGGGAGAGACCCTCCTCTGTGTCCTCTGTCCACTCTGAGGGGGATACCAGCCGCCGCACGCCCCTCATCAACCGTGTCTGGGAGGACCGGCCCTCCTCCACAGGCCCCACTCCCTTCCCATGTAACCCCCTGACCATGCGTTTCCCCGGTGGCATGCCAGTGTCAGCGCCCTCCCCCTCCTCTGGCCAGCTAGGGGTCCAGGGTCTGGGGCAGGGGCGGGCCTGGGAGGAGGAACCTAAGCCCCTGTTGTGTTCTCAGTACGAGACCTTGTCTGACAGCGAGTGAGAGACCCTGCCATGGAACAGAACAGCACCTACCAACTATCAACCACCtccactgctgctgcagacacacacacacaccactctacaCTCTCCACCCCACTCTACACTCTCCACCCAGGAAAAGGAGTGACCTCTTAGCCTCCCATCTCACACTGCTGACTGAGCATCTCAAGCGCTGATGGTGGTGTGCTGAGACACTGCTGctcagtgaatgtgtgtgtgtgttggtgtttctGTGTATACATTCACTCCAGGACTACTCTAAAGGACAAATCACTTGTTTTTTTacttgctcccccccccccctcttgctGGCCTTATCAATACGGACACATCAATTCATTCACTTTGTTGTGTACGTTTCTAGTGTCTTCTACGGATTGTGGAAGGGACTTGATACGGCCACATAGTCTGATGTTCATGTGTTTTAATCTGACCTGTTGATGGATTCACTGGCCCTGGACAAGGATGGATGTGTCCTCTGTTGTACAGGAATCCTGCTCTACTCTGTCTGGGCTCTGTGAGCAGGGTTTCAACCTGGAGCTTCAACTTGGAGAAGCCTGCTGCCTCCACTGACCATCTCGATCTCTCATTCTTTCTGCCAATGACCCCATGGACATGGAGTTAACCACACAGAGCTCTGCATGGAGAGGTCTGCTAGGGAAGTGGACTCCTTCACTGACCCATGTCACTGTGCAGAGGGCAGTGGGACAGGCAGGTAGCCAGGCAAATGGCATCCatagtgcagtagagtacagtacattagtggACACTCGGCCGGTGCATttctaccactatcagatgaTGGACAGGAGGGAAAAAAACACATTGTTTTCCTGTGTTTGTTATTTCTCCTTTTTAAATCAAGTCAGTCCAGTCTTGTGTTTGAAAGTGAGCTGAGACCGCTAGTACTTTTTATGGTGAATTTTGATGGTGTCAGTTATTGTTTCTTATTTGCAACGATTTATCTTGGGGGGTACGTGGGAGGGTTATATCATTGGTTAACAGGGTATACATGCTGTCCATTGCTGATTATGTCATCATACATTTGAAATGTTATAGGAGGACGGTGGCGGCGTATGTTCTCCGGGCATCCAATAGAGAGAGTGGACTGTGGGTGTGATGGATGGCACTAAGAGACAAGTGACACTTTCTCACTCTTTGTATATGAATCATGTCTATGTGTTTGTTGAGACTGTTTTTGGATGTTAAGCACTTAGTTGTCAATCTGTTCACAATGGCATTTTTAAGAATGTGTGTTTCGGGCAGGTGAGAATAGACTCAAGAAGAAGAGTGTAGAATCCTACTAATAGAAGCGTCCTCCTCCTTTAACATCTGTTTCATTTGGTCTTGCCACATACATGATTTAGTGTTCCCGCACTCAAGCGACAATCACAGCTAGTGAAACATGACCTAGTCCGCTTAGTGCGGGTAGAGACCAACCTTAAAGCTGCTTTAGGGCAAATTACCCGGCATTAGAGTTGGAATGTGCTTGCATTAAAGAGGTGACAAATAAAAGCCATCTATGTTTCTATGCCCCTTGGACCATGGTGGTGCCGGCTGTGGCTGTAGTGTGAGCCCCGGCTGGCCAGCTGGAAGTCTGTCTCTAGGATGGAATGCCTATTGTCTCTAGGAGCTGCCTGTTGTGACGGTCTGACCTCTGAACTTTTACTGTCTAGGGGAAGAGGAGCTCTGCCTCACCAGGCCAGACGCACATTTTTATCTAGACCCAATTTTGTACAGTTCTAAGATTCCTAGTGTTAAGTGCCATTCAttttacagtaatatacagtaatagTTACCAAGTGACGCACACATttctttaaatattttttttctacgTGCCAGGGTTATAAGTGTTTATGCAGGGAAATGTTGAAACCAAGAGCAGATGAAATGTCCTTCTTTTGATGTCTTTTGTTTTGTCCAAATCTGTCACAGCCTTAGCGCTTAACTGTCACTGTCACCCACACATGATTTACAATGGGAGCTGCTAACTTACTGTTGTGAATGTTAAGATATGAAAAGCAGTGTATTCTGTCTGAGGATTGTAGAACTTGCTGCTGTCACATCAGGTTACCATGACAATGGGCAACGACATGGTTGAATGTCCTCTTGCTCTTTGCAGGCTAAGCAATAGCTATATAAAAGGTGAATGCCaagaagaaagatgtaaaaaAGGGTGCTGTTTGAAAGGCGATCATATAAACATTGCCCAATTTGTTTTTACAGGCAACATACCCTCAGTCCTTAGTGAAAGGTATTATATTCTGGCATGGTCCTGATTCAAAGGAGGTTTAAACAGTCCAAAAGTTAGTGTTACATTTGTGTGATTTAAGTTTTTGTCCATTTCAATGATGGTGTCCATGGCTTGTATTGACTGTTGAAGCCAGAGAAGCACAGCTGTTCTCAGTGTGACCTGTTTAGAGGGACTGCACGGCAGTGTGTTATCCTGTCCACTAGTTGAGAGGGAGTTGAGTTAGTCATGATGGAGACGTGTTAGTAGTGAACGTGGAACAGCTTTCACTCCTTCCTCTTCACTGGATTACATAACGTTTCTACTCTGGCTACCTATTATACTGGTCATGTTTGACATCTAATCAGTCAAGGTGCAGCTATATGAAAAGGCTGTAACTGGACCCAACCGACTACAAGGTAACCCCAGCTTTGTATTATAAGATAGTTTGTGTCTTTACTTGTATATCAATTGACTATTCATGAAGTCATTGGGAGAGAGCAAAGTGACAGTAAAGTTTGACGTGACAAGAAGACCAAACCATATCCAGATGTGTTAGCTAAATAAATAGCAGAGGAAATGAGAATAACCCGTTGTTTTTAAATGTACTGATGTGTATTTGAATGATTTATGCTTTTCACTCGTTTCTTACTTGTTCTTACACCGCTTGCTTTGATTATGGTCATGACACTCTCCATGCTAATAGTTAGCATTTCATTTGTAATGAAAGGAATGTTTCAAAATGAACGAAAAATGAATTAATCGAAGGGCCGATAGGATCCCTGTATTGTCCACAGGTTGGGGGGGGCGACGACATTGACATTGACATTGATCAACCGTATTGTGCGTAatgatttgtttttttaaataattataacCCACTGTATAATAGCCAGGATTGTATATAGAACTGAAGAGATGTAAATATATATGTGGCTTGCTGCAAGGTTGGTATTTACAGAAAAACTATTCACACTGTTTAATTCTACATGCCCACCAGCAACCTTTGTGGAGAGCAGtgtaacaaaaacaaaaaaacactgcCTTAATGTTTAAATAAAAATCTTATTGCCATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555021 lncRNA downstream 3426 24312291 ~ 24314486 (-) True G488329
TU554452 lncRNA downstream 75852 24241854 ~ 24242060 (-) True G487826
TU554447 lncRNA downstream 82428 24235203 ~ 24235484 (-) True G487821
TU554446 lncRNA downstream 82864 24234802 ~ 24235048 (-) True G487820
TU554377 lncRNA downstream 108631 24207065 ~ 24209281 (-) True G487754
TU555206 lncRNA upstream 186581 24508336 ~ 24508631 (-) True G488444
TU555210 lncRNA upstream 191869 24513624 ~ 24513910 (-) True G488448
TU555216 lncRNA upstream 199557 24521312 ~ 24521637 (-) True G488454
TU555224 lncRNA upstream 217469 24539224 ~ 24539425 (-) True G488462
TU555225 lncRNA upstream 219091 24540846 ~ 24541640 (-) True G488463
XM_021605797.2 mRNA downstream 93652 24211144 ~ 24224260 (-) True ccdc92
XM_021605798.2 mRNA downstream 93676 24211144 ~ 24224236 (-) False ccdc92
XM_021605790.2 mRNA downstream 133543 24129400 ~ 24184369 (-) False dtx1
XM_036981738.1 mRNA upstream 235732 24557487 ~ 24566324 (-) True LOC118965019
XR_005052405.1 mRNA upstream 256950 24578705 ~ 24579373 (-) True LOC118965071
XM_021605809.2 mRNA upstream 276215 24597970 ~ 24634358 (-) False ep400
XM_036979699.1 mRNA upstream 276215 24597970 ~ 24634358 (-) False ep400
XM_036979700.1 mRNA upstream 276215 24597970 ~ 24634358 (-) False ep400
TU554111 other downstream 600129 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 732358 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 732358 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 925850 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 932005 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 31778 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 339142 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 384816 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 784450 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1175208 25496963 ~ 25497489 (-) True G489511

Expression Profile