RNA id: XM_036981738.1


Basic Information

Item Value
RNA id XM_036981738.1
length 3411
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC118965019
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24557487 ~ 24566324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATatgtttcctttcttttcttttctctagCCAATGGAGGGTGATTCAGCATGGCATGAAAAATAACCTCACATTCGAGCAGCTCTCCACGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGCATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCagtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcagtGCAGGGTGCCGCCAAAAATCCACTCGCAGAACCTCATCACCATGCTGTTCGCCTAAGAGGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGATCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTCCTGATATCCCTGGTTGAGGGTCACTCCAACcccacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCCCGGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTGCAGATCCTGGCCGAGCTACAGAGCCAAACGTCTGAGCCAGAGTGGGTAGGGTTTATCGAGCCCCTCATGGACCCTGTGACCGATGATGTGCTGGATGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCAATCTTCAATGTGACCTTGATGTTGAGTGTCCATCTGGGAAAGAAGGGACCACTCACTTTCTCAAAGAGACTGGATCCTCTACCAGTGTGGTGGCCAGAAAGCTTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCCCTGAATACCAGCTGcacagccctgacatctgtaaccTCCACTGCCACAGTGATTGTTAAGGCATTTGTGGGAGGCATGGAGACGATAGCATCATTTGAAGGCACATGTGAAGCCGTTGATTGGCCAgttcctgtaaatgaccacaaaaCAGGATCTTCACAGATGATAACCTTCTCTCTAGCACGCACACTCTACGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTATCCACTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTCAGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACTTAGTAGAGTTCCCAGAGAGAGCCAACCAATACCAGCTCTCTGTCGCTCCAATCTGGATACCAGTACTCAAGAAGTTCTTAGCagtgttttttccatctacaagtcagagttatcaaaaGTGGAGAGTAAATCCTTGGCCGTTGTCTGTTCATCTGATGAGTCCCTAGAGGCTTGTTGGTTTGTTGATGGTGTCCTATCAAAGCTCGATGACTATACTATTTCCCAGTCACCCTCACCCAATGAAGACTTGAGCGTGAGTACTCAATATTCTCAACTGAGctcagaagagagtgtcagaatCACAGAGTCCTCTACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTAGCAATGACTTCCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCGCAGTGCTCCCACGGGGGCTCCCAAATGGATGATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGACCATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCATACGGATCCGAAAGGACAGAAAATGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTAGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGGttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTAGAACCTGTTCATCTTTGTCCATTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGGGTCCTAGTTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTTGATCTGACCTGCCCCATCGTCAGGAGCTCCTGCATCGACACCAGGGTCTCTAAAATGCCAGATATTTCTTCAAGTGACATAAAGACAAAGATGATGGCACACATAGATGAACCCCTGCATCGTAACAGTCCAATGACTGACAGCAGTCGACCACCGAGTGCTAAAGCCTCTTTTCGATCCTCCACTCCGTCTTTCACCAGCAAGGGAACCTCTTTGGTGCCAAAGGAAGATGGGATTGACATTGACGAGAAGGAGGAGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCACCCCGGACATCAGCAGTGCCACTGCATTCCCACAACAGTACTTGATGGACCCCAGCAAAGATGatggcatctgttttgtcaccatactggtgataaggttgctatcgaagatcagaccctcagccctagatggaccctcccaacaggcagcagacatgacagaaacatctcagcaactcatcagacaagtcctgtctgagttctgtgctgCATCCAGATTCTCCAGGACACAGGCATATTCCCAGAACCTGTACATCCACAGGGTGTTCAGAGGTGTACATCAAAACCTCATGGAGGAGTTTGGCTCTTATAACACCCTGCAAGCAGCTATTTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacaaggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccattagaccaggctgagacagagaggggggctgaAGTCTCCCGCATTCCGACGGAGCAGATAAAGCAGTACTGGGTAGAGCTGGTGGGGCTTTCAGAagattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555237 lncRNA downstream 7534 24545395 ~ 24549953 (-) False G488471
TU555234 lncRNA downstream 14592 24542366 ~ 24542895 (-) True G488468
TU555225 lncRNA downstream 15847 24540846 ~ 24541640 (-) True G488463
TU555224 lncRNA downstream 18062 24539224 ~ 24539425 (-) True G488462
TU555216 lncRNA downstream 35850 24521312 ~ 24521637 (-) True G488454
TU555254 lncRNA upstream 26218 24592542 ~ 24596060 (-) True G488487
TU555273 lncRNA upstream 74201 24640525 ~ 24640755 (-) True G488505
TU555274 lncRNA upstream 75634 24641958 ~ 24642184 (-) True G488506
TU555275 lncRNA upstream 75893 24642217 ~ 24642779 (-) True G488507
TU555276 lncRNA upstream 77385 24643709 ~ 24644217 (-) True G488508
XM_036979698.1 mRNA downstream 53364 24317912 ~ 24504123 (-) False ncor2
XM_021605797.2 mRNA downstream 333227 24211144 ~ 24224260 (-) True ccdc92
XM_021605798.2 mRNA downstream 333251 24211144 ~ 24224236 (-) False ccdc92
XM_021605790.2 mRNA downstream 373118 24129400 ~ 24184369 (-) False dtx1
XR_005052405.1 mRNA upstream 12381 24578705 ~ 24579373 (-) True LOC118965071
XM_021605809.2 mRNA upstream 31646 24597970 ~ 24634358 (-) False ep400
XM_036979699.1 mRNA upstream 31646 24597970 ~ 24634358 (-) False ep400
XM_036979700.1 mRNA upstream 31646 24597970 ~ 24634358 (-) False ep400
XM_036979702.1 mRNA upstream 31646 24597970 ~ 24634358 (-) False ep400
TU555138 other downstream 203664 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 839704 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 971933 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 971933 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 1165425 23390017 ~ 23392062 (-) True G487016
TU555289 other upstream 94573 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 140247 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 539881 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 930639 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 1713383 26279707 ~ 26283169 (-) True LOC110525606

Expression Profile